Variant report

Variant	rs12271798
Chromosome Location	chr11:108074597-108074598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11212608	1.00[AMR][1000 genomes]
rs12274438	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277464	1.00[AMR][1000 genomes]
rs12278194	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12279930	1.00[AMR][1000 genomes]
rs12285835	0.92[AFR][1000 genomes]
rs12288149	1.00[AMR][1000 genomes]
rs12290096	1.00[AMR][1000 genomes]
rs13377275	1.00[YRI][hapmap]
rs56355831	1.00[AMR][1000 genomes]
rs7948919	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108017000-108075000	Strong transcription	Dnd41	blood
2	chr11:108032600-108075000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:108050000-108074800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:108053800-108075600	Weak transcription	Fetal Heart	heart
5	chr11:108057600-108075000	Weak transcription	Colonic Mucosa	Colon
6	chr11:108060000-108077000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:108060000-108077000	Weak transcription	NHLF	lung
8	chr11:108060200-108076800	Weak transcription	Hela-S3	cervix
9	chr11:108061800-108075000	Weak transcription	Ovary	ovary
10	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:108063400-108077200	Weak transcription	NHDF-Ad	bronchial
12	chr11:108065400-108075400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
13	chr11:108067200-108076800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:108067400-108076400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:108067400-108077000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:108067600-108076800	Weak transcription	Adipose Nuclei	Adipose
17	chr11:108067800-108074600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:108068000-108074800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
19	chr11:108068000-108075000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:108068800-108074600	Weak transcription	HepG2	liver
21	chr11:108068800-108074800	Weak transcription	Liver	Liver
22	chr11:108069000-108074800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr11:108069000-108074800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:108069200-108075400	Genic enhancers	Primary T cells fromperipheralblood	blood
25	chr11:108070000-108075200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:108070200-108074800	Weak transcription	Pancreas	Pancrea
27	chr11:108070200-108074800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:108070200-108075200	Weak transcription	Gastric	stomach
29	chr11:108070200-108076600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:108070400-108074800	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:108070400-108074800	Weak transcription	Spleen	Spleen
32	chr11:108070400-108075000	Enhancers	Placenta	Placenta
33	chr11:108070400-108075400	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:108070600-108074800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:108070600-108074800	Weak transcription	Esophagus	oesophagus
36	chr11:108070600-108074800	Weak transcription	Left Ventricle	heart
37	chr11:108070600-108074800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:108070600-108077000	Weak transcription	Aorta	Aorta
39	chr11:108070600-108077000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:108070600-108089800	Weak transcription	Psoas Muscle	Psoas
41	chr11:108071000-108074600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:108071000-108074800	Weak transcription	Lung	lung
43	chr11:108071000-108075000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:108071000-108077000	Weak transcription	Brain Angular Gyrus	brain
45	chr11:108071000-108077000	Weak transcription	Right Ventricle	heart
46	chr11:108071000-108091600	Weak transcription	Right Atrium	heart
47	chr11:108071200-108074600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:108071200-108074800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:108071200-108075000	Weak transcription	NH-A	brain
50	chr11:108071200-108075400	Weak transcription	HSMMtube	muscle

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