Variant report

Variant	rs11212664
Chromosome Location	chr11:108347573-108347574
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108338253..108339877-chr11:108346861..108349022,2	K562	blood:
2	chr11:108344700..108347624-chr11:108347817..108350215,2	K562	blood:

Variant related genes	Relation type
ENSG00000166323	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1051141	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10890831	0.94[YRI][hapmap]
rs11212656	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11686	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828864	0.86[AFR][1000 genomes]
rs12293442	0.83[ASW][hapmap];0.90[LWK][hapmap];0.94[YRI][hapmap]
rs3092844	0.83[ASW][hapmap];0.84[LWK][hapmap];0.84[YRI][hapmap]
rs4357655	0.83[ASW][hapmap];0.83[LWK][hapmap];0.84[YRI][hapmap]
rs4754317	0.93[LWK][hapmap];0.90[MKK][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs7396719	0.86[AFR][1000 genomes]
rs7942747	0.84[YRI][hapmap]
rs7947933	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108338200-108359000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:108338200-108367600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:108338400-108347600	Weak transcription	Lung	lung
4	chr11:108338400-108352600	Weak transcription	Spleen	Spleen
5	chr11:108338600-108347800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:108338600-108364800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:108338600-108367200	Weak transcription	A549	lung
8	chr11:108338600-108367800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:108338800-108347600	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:108338800-108347600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:108338800-108347800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:108338800-108347800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:108338800-108347800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:108338800-108347800	Weak transcription	Colonic Mucosa	Colon
15	chr11:108338800-108347800	Weak transcription	Left Ventricle	heart
16	chr11:108338800-108347800	Weak transcription	Right Ventricle	heart
17	chr11:108338800-108348200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:108338800-108349000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:108338800-108352400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:108338800-108354800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:108338800-108356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:108338800-108356800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:108338800-108356800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:108338800-108357200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:108338800-108367200	Weak transcription	HSMMtube	muscle
26	chr11:108338800-108367400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:108338800-108367400	Weak transcription	HUVEC	blood vessel
28	chr11:108338800-108367600	Weak transcription	Brain Angular Gyrus	brain
29	chr11:108338800-108367600	Weak transcription	Small Intestine	intestine
30	chr11:108338800-108368000	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:108339000-108347600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:108339000-108348000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:108339000-108356800	Weak transcription	Brain Germinal Matrix	brain
34	chr11:108339000-108359000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:108339000-108367200	Weak transcription	NHEK	skin
36	chr11:108339000-108367400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:108339000-108368000	Weak transcription	Primary B cells from cord blood	blood
38	chr11:108339000-108368000	Weak transcription	Fetal Brain Female	brain
39	chr11:108339200-108347600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:108339200-108347600	Weak transcription	Brain Anterior Caudate	brain
41	chr11:108339200-108348000	Weak transcription	NHDF-Ad	bronchial
42	chr11:108339200-108348800	Weak transcription	Hela-S3	cervix
43	chr11:108339200-108352400	Weak transcription	K562	blood
44	chr11:108339200-108352800	Weak transcription	HepG2	liver
45	chr11:108339200-108363000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:108339200-108367400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:108339200-108367600	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:108339200-108367800	Weak transcription	Fetal Brain Male	brain
49	chr11:108339200-108368000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:108339400-108347600	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links