Variant report

Variant	rs3092844
Chromosome Location	chr11:108239307-108239308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108235117..108237355-chr11:108238293..108240320,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10890831	0.88[YRI][hapmap]
rs10890838	0.85[ASW][hapmap];0.95[YRI][hapmap]
rs11212549	0.83[AMR][1000 genomes]
rs11212564	1.00[AMR][1000 genomes]
rs11212607	0.92[AFR][1000 genomes]
rs11212630	0.85[AFR][1000 genomes]
rs11212650	0.81[YRI][hapmap]
rs11212656	0.83[ASW][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];0.84[YRI][hapmap]
rs11212664	0.83[ASW][hapmap];0.84[LWK][hapmap];0.84[YRI][hapmap]
rs11501004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11686	0.83[ASW][hapmap];0.84[LWK][hapmap];0.84[YRI][hapmap]
rs11824200	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271119	0.83[AMR][1000 genomes]
rs12276365	0.83[AMR][1000 genomes]
rs12278964	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12285440	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12286263	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287161	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12291829	0.83[AMR][1000 genomes]
rs12293442	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs12294810	0.83[AMR][1000 genomes]
rs1800735	1.00[AMR][1000 genomes]
rs2234997	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3092906	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218678	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218693	1.00[MEX][hapmap]
rs4357655	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4988090	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4988117	0.83[AMR][1000 genomes]
rs58937701	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61603186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:108212200-108241400	Weak transcription	Hela-S3	cervix
3	chr11:108222800-108242200	Weak transcription	Fetal Intestine Small	intestine
4	chr11:108225400-108243200	Weak transcription	Fetal Heart	heart
5	chr11:108226000-108240200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:108226400-108241400	Weak transcription	Thymus	Thymus
7	chr11:108226400-108244200	Weak transcription	Psoas Muscle	Psoas
8	chr11:108226400-108244600	Weak transcription	Gastric	stomach
9	chr11:108226600-108242000	Weak transcription	Lung	lung
10	chr11:108226600-108257400	Weak transcription	Right Ventricle	heart
11	chr11:108226800-108241400	Weak transcription	Aorta	Aorta
12	chr11:108226800-108241400	Weak transcription	NHEK	skin
13	chr11:108226800-108242800	Weak transcription	Placenta	Placenta
14	chr11:108226800-108243400	Weak transcription	Fetal Brain Male	brain
15	chr11:108227000-108239400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:108227200-108240800	Weak transcription	Pancreas	Pancrea
17	chr11:108227200-108241400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:108227600-108240400	Weak transcription	GM12878-XiMat	blood
19	chr11:108227600-108243200	Weak transcription	NH-A	brain
20	chr11:108227600-108245600	Weak transcription	Fetal Brain Female	brain
21	chr11:108227800-108239600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:108227800-108242000	Weak transcription	Brain Germinal Matrix	brain
23	chr11:108227800-108242800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:108227800-108243400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:108227800-108243400	Weak transcription	Brain Angular Gyrus	brain
26	chr11:108227800-108243800	Weak transcription	Fetal Kidney	kidney
27	chr11:108227800-108244200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr11:108227800-108245600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:108228200-108239400	Weak transcription	Fetal Stomach	stomach
30	chr11:108233800-108240000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:108233800-108240200	Strong transcription	Primary T cells from cord blood	blood
32	chr11:108233800-108242400	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:108234000-108241000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:108234000-108242800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:108234200-108239600	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr11:108234200-108242000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr11:108234400-108242400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr11:108235200-108244000	Weak transcription	Osteobl	bone
39	chr11:108235400-108240200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:108235400-108240400	Strong transcription	Liver	Liver
41	chr11:108235400-108240800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr11:108235800-108239800	Weak transcription	NHLF	lung
43	chr11:108235800-108240200	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:108236000-108243200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:108236200-108243400	Weak transcription	Ovary	ovary
46	chr11:108236200-108243600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr11:108236200-108245000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:108236400-108242200	Weak transcription	HSMMtube	muscle
49	chr11:108236400-108244000	Weak transcription	HSMM	muscle
50	chr11:108236400-108244200	Weak transcription	Adipose Nuclei	Adipose

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