Variant report

Variant	rs12287161
Chromosome Location	chr11:108107924-108107925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108105917..108107991-chr11:108115089..108117555,3	K562	blood:
2	chr11:108105026..108107991-chr11:108115213..108117724,3	K562	blood:
3	chr11:108092532..108097509-chr11:108106620..108109590,6	K562	blood:

Variant related genes	Relation type
ENSG00000149308	Chromatin interaction
ENSG00000149311	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10890831	0.88[YRI][hapmap]
rs10890838	0.85[ASW][hapmap];0.95[YRI][hapmap]
rs11212549	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11212564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11501004	1.00[AMR][1000 genomes]
rs11824200	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271119	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12276365	0.83[AMR][1000 genomes]
rs12278964	0.83[AMR][1000 genomes]
rs12285440	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286263	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291829	0.83[AMR][1000 genomes]
rs12293442	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.89[YRI][hapmap]
rs12294810	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1800735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2234997	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3092844	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3092906	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218678	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218693	1.00[MEX][hapmap]
rs4357655	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap]
rs4988090	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4988117	0.83[AMR][1000 genomes]
rs58937701	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61603186	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv556431	chr11:108098142-108115587	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv556432	chr11:108098563-108115539	Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094600-108121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108094800-108116000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
4	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:108095000-108121400	Weak transcription	Colonic Mucosa	Colon
6	chr11:108095400-108119800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:108095800-108119800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:108095800-108122400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:108096000-108148600	Weak transcription	Fetal Heart	heart
10	chr11:108096400-108156400	Weak transcription	NHLF	lung
11	chr11:108096600-108108600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:108096600-108121400	Weak transcription	Spleen	Spleen
13	chr11:108096600-108128400	Weak transcription	Pancreas	Pancrea
14	chr11:108097000-108129200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:108097800-108112000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:108098200-108108600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:108098200-108108800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:108098200-108112400	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:108098400-108108600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:108098400-108122400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:108098400-108131600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:108098800-108108800	Strong transcription	Liver	Liver
23	chr11:108099000-108108000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:108099000-108108600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:108099200-108108600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:108099200-108108600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:108099400-108108000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:108099800-108119600	Weak transcription	NHDF-Ad	bronchial
29	chr11:108099800-108139000	Weak transcription	Hela-S3	cervix
30	chr11:108100400-108108000	Strong transcription	Left Ventricle	heart
31	chr11:108100600-108119200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:108100600-108128200	Weak transcription	K562	blood
33	chr11:108100800-108113400	Weak transcription	Aorta	Aorta
34	chr11:108101000-108110600	Weak transcription	Small Intestine	intestine
35	chr11:108101200-108128200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:108101600-108130800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:108101800-108116200	Weak transcription	Ovary	ovary
38	chr11:108101800-108121400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:108102200-108121400	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:108104000-108109600	Weak transcription	HSMMtube	muscle
41	chr11:108104200-108111000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:108104200-108130000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:108104200-108147400	Weak transcription	Gastric	stomach
44	chr11:108104400-108110000	Weak transcription	Osteobl	bone
45	chr11:108104400-108110800	Weak transcription	Placenta	Placenta
46	chr11:108104400-108113600	Weak transcription	Fetal Intestine Small	intestine
47	chr11:108104600-108121400	Weak transcription	Right Ventricle	heart
48	chr11:108104600-108144000	Weak transcription	Lung	lung
49	chr11:108105400-108108200	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:108105400-108111400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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