Variant report

Variant	rs11212824
Chromosome Location	chr11:108822187-108822188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10502103	1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.85[ASN][1000 genomes]
rs12574721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12574758	0.82[ASN][1000 genomes]
rs12575278	0.95[CHB][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.86[ASN][1000 genomes]
rs12577382	0.82[ASN][1000 genomes]
rs12785398	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12794597	0.81[ASN][1000 genomes]
rs12796331	1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.90[ASN][1000 genomes]
rs12802313	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12808674	0.95[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.82[ASN][1000 genomes]
rs1365047	0.85[CHB][hapmap]
rs17108571	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17108579	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs17108608	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs17108703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17108744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2061681	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs2553749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2553750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2553751	1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.85[ASN][1000 genomes]
rs2553754	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs2553757	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs2553760	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs2553761	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs2615727	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2615756	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs2726885	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs2726886	0.90[CHD][hapmap]
rs2726896	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[ASN][1000 genomes]
rs2726910	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs2726911	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs2726913	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs2726914	0.85[CHB][hapmap]
rs2726916	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs2726919	0.85[CHB][hapmap]
rs2726920	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs28736339	0.81[ASN][1000 genomes]
rs34350110	0.82[ASN][1000 genomes]
rs34354308	0.82[ASN][1000 genomes]
rs34363971	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34451436	0.81[ASN][1000 genomes]
rs34593113	0.86[ASN][1000 genomes]
rs34651663	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34848528	0.82[ASN][1000 genomes]
rs35244070	0.82[ASN][1000 genomes]
rs35430545	0.83[ASN][1000 genomes]
rs35517426	0.85[ASN][1000 genomes]
rs35756735	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36034048	0.81[ASN][1000 genomes]
rs36043878	0.81[ASN][1000 genomes]
rs4317954	0.91[CHB][hapmap];0.90[ASN][1000 genomes]
rs57014838	0.85[ASN][1000 genomes]
rs71489919	0.81[ASN][1000 genomes]
rs71489925	0.82[ASN][1000 genomes]
rs71489928	0.89[ASN][1000 genomes]
rs71489929	0.98[ASN][1000 genomes]
rs7930675	0.86[ASN][1000 genomes]
rs898972	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108805200-108829600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108810200-108829000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:108812000-108822200	Weak transcription	Pancreas	Pancrea
4	chr11:108812000-108823400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:108812200-108828800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:108819400-108828400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:108819400-108828400	Weak transcription	A549	lung
8	chr11:108819400-108828400	Weak transcription	NHEK	skin

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