Variant report

Variant	rs35517426
Chromosome Location	chr11:108781138-108781139
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10502103	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11212824	0.85[ASN][1000 genomes]
rs11828110	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12574721	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12574758	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12575278	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12577382	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12577980	0.83[EUR][1000 genomes]
rs12785398	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12794048	0.83[AMR][1000 genomes]
rs12794597	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12796331	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12801974	0.83[AMR][1000 genomes]
rs12802313	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12803616	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12808060	0.86[AMR][1000 genomes]
rs12808674	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17108571	0.88[EUR][1000 genomes]
rs17108579	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17108608	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17108703	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17108744	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2553749	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2553750	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2553751	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2615756	0.83[ASN][1000 genomes]
rs2726896	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28736339	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34350110	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34354308	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34363971	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34451436	0.87[EUR][1000 genomes]
rs34593113	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34651663	0.91[ASN][1000 genomes]
rs34805458	0.85[EUR][1000 genomes]
rs34848528	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34942750	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35244070	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35430545	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35754206	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35756735	0.83[ASN][1000 genomes]
rs36006135	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36034048	0.85[EUR][1000 genomes]
rs36043878	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4317954	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57014838	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57484308	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71489918	0.92[AMR][1000 genomes]
rs71489919	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71489922	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71489925	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71489928	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71489929	0.85[ASN][1000 genomes]
rs7930675	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs898972	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
2	chr11:108763000-108797600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:108768000-108810600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:108769000-108791200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:108769200-108788600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:108769800-108789600	Weak transcription	Primary B cells from cord blood	blood
7	chr11:108775000-108794400	Weak transcription	Aorta	Aorta
8	chr11:108777200-108783800	Weak transcription	Right Atrium	heart
9	chr11:108777200-108797000	Weak transcription	Psoas Muscle	Psoas
10	chr11:108777800-108782800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:108777800-108783000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:108777800-108783000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:108777800-108786800	Weak transcription	NHEK	skin
14	chr11:108778000-108782800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:108778000-108782800	Weak transcription	NH-A	brain
16	chr11:108778000-108785000	Weak transcription	A549	lung
17	chr11:108778000-108785200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:108778000-108786800	Weak transcription	NHDF-Ad	bronchial
19	chr11:108778000-108799600	Weak transcription	HMEC	breast
20	chr11:108778200-108783000	Weak transcription	Osteobl	bone
21	chr11:108778200-108783200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:108778200-108810600	Weak transcription	Ovary	ovary
23	chr11:108778400-108783200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:108778400-108783200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:108778400-108783400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:108778600-108783200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:108778600-108784000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:108778600-108785800	Weak transcription	NHLF	lung
29	chr11:108779600-108783400	Enhancers	Fetal Thymus	thymus
30	chr11:108779600-108783400	Enhancers	Thymus	Thymus
31	chr11:108779800-108782200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:108779800-108783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:108780000-108783200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:108780000-108784000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:108780600-108781800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:108780600-108785600	Weak transcription	Hela-S3	cervix
37	chr11:108780600-108810600	Weak transcription	Pancreas	Pancrea
38	chr11:108780800-108781200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:108780800-108781400	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr11:108780800-108781800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr11:108780800-108790000	Weak transcription	Dnd41	blood

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