Variant report

Variant	rs35754206
Chromosome Location	chr11:108625768-108625769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108617140..108620496-chr11:108622218..108627309,5	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10502103	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10749924	0.86[ASN][1000 genomes]
rs10749925	0.86[ASN][1000 genomes]
rs11828110	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12574567	0.89[ASN][1000 genomes]
rs12574721	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12574758	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12575278	0.83[EUR][1000 genomes]
rs12577382	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12577980	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12785398	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12785439	0.96[ASN][1000 genomes]
rs12786616	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12790940	0.85[AMR][1000 genomes]
rs12794048	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12794597	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12795663	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12796331	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12800516	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12800726	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12801974	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12802313	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12803616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12808060	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12808674	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1462787	0.94[ASN][1000 genomes]
rs1482268	0.87[ASN][1000 genomes]
rs17108571	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17108579	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17108608	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17108703	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2061681	0.96[ASN][1000 genomes]
rs2553749	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2553750	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2553751	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2615727	0.91[ASN][1000 genomes]
rs2615756	0.88[ASN][1000 genomes]
rs2726885	0.94[ASN][1000 genomes]
rs2726896	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28736339	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34138098	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34180595	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34350110	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34354308	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34451436	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34593113	0.82[EUR][1000 genomes]
rs34805458	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34848528	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34942750	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35085871	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35244070	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35430545	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35517426	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35525430	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35777838	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36006135	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36034048	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36043878	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4317954	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57014838	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57484308	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7107825	0.83[ASN][1000 genomes]
rs71489913	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71489916	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71489918	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71489919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71489922	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71489925	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71489928	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7930675	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs898972	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs970162	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs970164	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108581600-108626600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:108604600-108625800	Weak transcription	Primary T cells from cord blood	blood
3	chr11:108604800-108627800	Weak transcription	Left Ventricle	heart
4	chr11:108605800-108663800	Weak transcription	K562	blood
5	chr11:108606000-108627400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:108607600-108644600	Weak transcription	Aorta	Aorta
7	chr11:108607800-108628200	Weak transcription	Liver	Liver
8	chr11:108612200-108627400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:108612600-108626600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:108612800-108630200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:108614600-108628200	Weak transcription	Pancreas	Pancrea
12	chr11:108614600-108638600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:108615600-108657000	Weak transcription	Primary B cells from cord blood	blood
14	chr11:108617600-108627400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:108622400-108629600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:108623000-108628600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:108625000-108626400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:108625000-108626800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:108625200-108626400	Enhancers	Osteobl	bone
20	chr11:108625200-108627000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:108625400-108625800	Enhancers	Brain Germinal Matrix	brain
22	chr11:108625400-108625800	Enhancers	Fetal Heart	heart
23	chr11:108625400-108625800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr11:108625400-108625800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:108625400-108625800	Enhancers	NHLF	lung
26	chr11:108625400-108626000	Enhancers	Primary B cells from peripheral blood	blood
27	chr11:108625400-108626000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:108625400-108626000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr11:108625400-108626000	Enhancers	Adipose Nuclei	Adipose
30	chr11:108625400-108626000	Enhancers	Colon Smooth Muscle	Colon
31	chr11:108625400-108626200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:108625400-108626200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:108625400-108626200	Enhancers	GM12878-XiMat	blood
34	chr11:108625400-108626200	Enhancers	HSMM	muscle
35	chr11:108625400-108626200	Enhancers	NHDF-Ad	bronchial
36	chr11:108625400-108626400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr11:108625400-108626600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:108625400-108627000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:108625600-108625800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:108625600-108625800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:108625600-108626000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:108625600-108626000	Enhancers	Fetal Muscle Leg	muscle
43	chr11:108625600-108626000	Enhancers	Ovary	ovary
44	chr11:108625600-108626000	Enhancers	Psoas Muscle	Psoas
45	chr11:108625600-108626000	Enhancers	Right Atrium	heart
46	chr11:108625600-108626000	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr11:108625600-108626000	Enhancers	NH-A	brain
48	chr11:108625600-108626400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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