Variant report

Variant	rs7107825
Chromosome Location	chr11:108582163-108582164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10749924	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10749925	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12574567	0.94[ASN][1000 genomes]
rs12574721	0.81[ASN][1000 genomes]
rs12577382	0.81[ASN][1000 genomes]
rs12577980	0.83[ASN][1000 genomes]
rs12785439	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12786616	0.90[ASN][1000 genomes]
rs12794048	0.94[ASN][1000 genomes]
rs12795663	0.93[ASN][1000 genomes]
rs12800516	0.92[ASN][1000 genomes]
rs12800726	0.92[ASN][1000 genomes]
rs12801974	0.94[ASN][1000 genomes]
rs12802313	0.81[ASN][1000 genomes]
rs12803616	0.83[ASN][1000 genomes]
rs12808060	0.93[ASN][1000 genomes]
rs1462787	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1482268	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17108571	0.82[ASN][1000 genomes]
rs2061681	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2615723	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2615725	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2615727	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2615753	0.85[EUR][1000 genomes]
rs2615756	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2726885	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2726886	0.87[EUR][1000 genomes]
rs2726890	0.89[EUR][1000 genomes]
rs28736339	0.86[ASN][1000 genomes]
rs34138098	0.88[ASN][1000 genomes]
rs34180595	0.94[ASN][1000 genomes]
rs34350110	0.81[ASN][1000 genomes]
rs34354308	0.81[ASN][1000 genomes]
rs34451436	0.86[ASN][1000 genomes]
rs34805458	0.85[ASN][1000 genomes]
rs34848528	0.84[ASN][1000 genomes]
rs34942750	0.83[ASN][1000 genomes]
rs35085871	0.91[ASN][1000 genomes]
rs35244070	0.81[ASN][1000 genomes]
rs35430545	0.80[ASN][1000 genomes]
rs35525430	0.92[ASN][1000 genomes]
rs35754206	0.83[ASN][1000 genomes]
rs35777838	0.91[ASN][1000 genomes]
rs36034048	0.86[ASN][1000 genomes]
rs36043878	0.86[ASN][1000 genomes]
rs57484308	0.88[ASN][1000 genomes]
rs71489913	0.91[ASN][1000 genomes]
rs71489916	0.94[ASN][1000 genomes]
rs71489918	0.94[ASN][1000 genomes]
rs71489919	0.86[ASN][1000 genomes]
rs71489922	0.83[ASN][1000 genomes]
rs71489925	0.81[ASN][1000 genomes]
rs898972	0.81[ASN][1000 genomes]
rs970162	0.94[ASN][1000 genomes]
rs970164	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108564800-108595400	Weak transcription	Hela-S3	cervix
2	chr11:108570000-108583400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:108572000-108590400	Weak transcription	Stomach Mucosa	stomach
4	chr11:108573800-108582800	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr11:108574800-108586800	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:108575400-108599400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:108577200-108582600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:108577200-108583800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:108577200-108586200	Strong transcription	HSMM	muscle
10	chr11:108577400-108583200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:108577400-108584000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr11:108577400-108584200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:108577600-108582800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr11:108577600-108584000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:108577600-108604400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:108577800-108582800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr11:108578000-108604400	Weak transcription	Small Intestine	intestine
18	chr11:108578200-108582800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:108578200-108596000	Weak transcription	Right Ventricle	heart
20	chr11:108578200-108604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:108578400-108582800	ZNF genes & repeats	GM12878-XiMat	blood
22	chr11:108578600-108582800	ZNF genes & repeats	Fetal Lung	lung
23	chr11:108578800-108596800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:108578800-108604000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:108578800-108604000	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:108578800-108604200	Weak transcription	NHLF	lung
27	chr11:108578800-108604600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:108578800-108614400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:108579000-108586200	Strong transcription	Dnd41	blood
30	chr11:108579000-108595600	Weak transcription	Colonic Mucosa	Colon
31	chr11:108579200-108582600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
32	chr11:108579200-108585400	Weak transcription	Fetal Thymus	thymus
33	chr11:108579200-108604000	Weak transcription	HUVEC	blood vessel
34	chr11:108579600-108600600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:108579800-108583000	ZNF genes & repeats	Fetal Kidney	kidney
36	chr11:108579800-108595000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:108579800-108604200	Weak transcription	Psoas Muscle	Psoas
38	chr11:108580000-108582200	Strong transcription	Liver	Liver
39	chr11:108580000-108582200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr11:108580000-108582600	Strong transcription	Primary B cells from peripheral blood	blood
41	chr11:108580000-108582800	Strong transcription	Primary B cells from cord blood	blood
42	chr11:108580000-108583000	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:108580000-108583000	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr11:108580000-108587200	Strong transcription	Primary T cells from cord blood	blood
45	chr11:108580000-108593400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:108580000-108593800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:108580000-108603800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:108580200-108586800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:108580200-108593200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:108580200-108593200	Weak transcription	Rectal Mucosa Donor 31	rectum

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