Variant report

Variant	rs10749924
Chromosome Location	chr11:108560740-108560741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10749925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574567	0.96[ASN][1000 genomes]
rs12574721	0.82[ASN][1000 genomes]
rs12574758	0.80[ASN][1000 genomes]
rs12577382	0.82[ASN][1000 genomes]
rs12577980	0.85[ASN][1000 genomes]
rs12785439	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12786616	0.96[ASN][1000 genomes]
rs12794048	0.96[ASN][1000 genomes]
rs12795663	0.95[ASN][1000 genomes]
rs12800516	0.95[ASN][1000 genomes]
rs12800726	0.95[ASN][1000 genomes]
rs12801974	0.96[ASN][1000 genomes]
rs12802313	0.82[ASN][1000 genomes]
rs12803616	0.84[ASN][1000 genomes]
rs12808060	0.95[ASN][1000 genomes]
rs12808674	0.80[ASN][1000 genomes]
rs1462787	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1482268	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17108571	0.83[ASN][1000 genomes]
rs2061681	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2615723	0.88[EUR][1000 genomes]
rs2615725	0.89[EUR][1000 genomes]
rs2615727	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2615753	0.87[EUR][1000 genomes]
rs2615756	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2726885	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2726886	0.88[EUR][1000 genomes]
rs2726890	0.88[EUR][1000 genomes]
rs28736339	0.87[ASN][1000 genomes]
rs34138098	0.90[ASN][1000 genomes]
rs34180595	0.96[ASN][1000 genomes]
rs34350110	0.82[ASN][1000 genomes]
rs34354308	0.82[ASN][1000 genomes]
rs34451436	0.87[ASN][1000 genomes]
rs34805458	0.86[ASN][1000 genomes]
rs34848528	0.85[ASN][1000 genomes]
rs34942750	0.84[ASN][1000 genomes]
rs35085871	0.94[ASN][1000 genomes]
rs35244070	0.82[ASN][1000 genomes]
rs35430545	0.81[ASN][1000 genomes]
rs35525430	0.95[ASN][1000 genomes]
rs35754206	0.86[ASN][1000 genomes]
rs35777838	0.94[ASN][1000 genomes]
rs36034048	0.87[ASN][1000 genomes]
rs36043878	0.87[ASN][1000 genomes]
rs57484308	0.90[ASN][1000 genomes]
rs7107825	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71489913	0.94[ASN][1000 genomes]
rs71489916	0.96[ASN][1000 genomes]
rs71489918	0.96[ASN][1000 genomes]
rs71489919	0.87[ASN][1000 genomes]
rs71489922	0.84[ASN][1000 genomes]
rs71489925	0.82[ASN][1000 genomes]
rs898972	0.82[ASN][1000 genomes]
rs970162	0.96[ASN][1000 genomes]
rs970164	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108536600-108578400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108538200-108574800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:108541400-108562800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:108541400-108578200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:108543600-108575200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:108544200-108569000	Weak transcription	Fetal Heart	heart
7	chr11:108546800-108561000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:108546800-108569400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:108548200-108561000	Weak transcription	Lung	lung
10	chr11:108548200-108561200	Weak transcription	Gastric	stomach
11	chr11:108548200-108562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:108548200-108577600	Weak transcription	Colonic Mucosa	Colon
13	chr11:108548400-108577200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:108548600-108570200	Weak transcription	Fetal Kidney	kidney
15	chr11:108548600-108577400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:108548800-108561200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:108548800-108561200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:108548800-108564200	Weak transcription	Hela-S3	cervix
19	chr11:108548800-108577400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:108549000-108565800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr11:108549200-108577400	Weak transcription	Right Ventricle	heart
22	chr11:108550400-108565200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:108550800-108561200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:108550800-108564200	Weak transcription	Fetal Brain Male	brain
25	chr11:108551200-108561000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:108551200-108561000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:108552400-108564200	Weak transcription	HMEC	breast
28	chr11:108554400-108561000	Weak transcription	Thymus	Thymus
29	chr11:108554400-108577800	Weak transcription	Psoas Muscle	Psoas
30	chr11:108556200-108561800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr11:108556200-108564400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:108556200-108566200	Strong transcription	Primary T cells from cord blood	blood
33	chr11:108556200-108566400	Strong transcription	Liver	Liver
34	chr11:108556200-108567000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:108556200-108567400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr11:108556200-108567800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:108556400-108561800	Strong transcription	Primary hematopoietic stem cells	blood
38	chr11:108556400-108565800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:108556400-108566400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:108556400-108566800	Strong transcription	Primary B cells from peripheral blood	blood
41	chr11:108556600-108566400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:108556600-108566800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr11:108556800-108561800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:108556800-108561800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr11:108556800-108566200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:108556800-108566200	Strong transcription	Adipose Nuclei	Adipose
47	chr11:108556800-108566400	Strong transcription	Primary B cells from cord blood	blood
48	chr11:108556800-108566800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:108557000-108564200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:108557200-108561000	Weak transcription	A549	lung

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