Variant report

Variant	rs71489918
Chromosome Location	chr11:108611803-108611804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108601301..108603596-chr11:108608940..108611887,2	K562	blood:
2	chr11:108606643..108608338-chr11:108611521..108613819,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10502103	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10749924	0.96[ASN][1000 genomes]
rs10749925	0.96[ASN][1000 genomes]
rs11828110	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12574567	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574721	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12574758	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12575278	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12577382	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12577980	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12785398	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12785439	0.86[ASN][1000 genomes]
rs12786616	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12794048	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794597	0.82[ASN][1000 genomes]
rs12795663	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12796331	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12800516	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12800726	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12801974	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802313	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12803616	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12808060	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12808674	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1462787	0.88[ASN][1000 genomes]
rs1482268	0.97[ASN][1000 genomes]
rs17108571	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17108579	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17108608	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17108703	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17108744	0.84[AMR][1000 genomes]
rs2061681	0.86[ASN][1000 genomes]
rs2553749	0.81[ASN][1000 genomes]
rs2553750	0.81[ASN][1000 genomes]
rs2553751	0.82[ASN][1000 genomes]
rs2615727	0.86[ASN][1000 genomes]
rs2615756	0.83[ASN][1000 genomes]
rs2726885	0.88[ASN][1000 genomes]
rs2726896	0.81[ASN][1000 genomes]
rs28736339	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34138098	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34180595	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34350110	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34354308	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34451436	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34593113	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34805458	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34848528	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34942750	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35085871	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35244070	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35430545	0.84[ASN][1000 genomes]
rs35517426	0.92[AMR][1000 genomes]
rs35525430	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35754206	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35777838	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36006135	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36034048	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36043878	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4317954	0.92[AMR][1000 genomes]
rs57014838	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57484308	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107825	0.94[ASN][1000 genomes]
rs71489913	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71489916	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489919	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71489922	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71489925	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71489928	0.95[AMR][1000 genomes]
rs7930675	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs898972	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs970162	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970164	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108578800-108614400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:108581600-108626600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:108581800-108616200	Weak transcription	Esophagus	oesophagus
4	chr11:108592000-108620000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:108594000-108612800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:108594200-108615400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:108594400-108613600	Weak transcription	HSMMtube	muscle
8	chr11:108594400-108625400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:108596400-108614400	Weak transcription	Right Ventricle	heart
10	chr11:108596400-108621000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:108603600-108617600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:108604600-108616000	Weak transcription	Right Atrium	heart
13	chr11:108604600-108625600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:108604600-108625800	Weak transcription	Primary T cells from cord blood	blood
15	chr11:108604800-108627800	Weak transcription	Left Ventricle	heart
16	chr11:108605200-108614800	Weak transcription	A549	lung
17	chr11:108605200-108618400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:108605400-108625400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr11:108605800-108622800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:108605800-108663800	Weak transcription	K562	blood
21	chr11:108606000-108627400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:108607600-108614800	Weak transcription	Ovary	ovary
23	chr11:108607600-108622000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:108607600-108644600	Weak transcription	Aorta	Aorta
25	chr11:108607800-108628200	Weak transcription	Liver	Liver
26	chr11:108610800-108612800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:108611000-108625400	Weak transcription	NHLF	lung
28	chr11:108611400-108612600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:108611400-108612800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr11:108611600-108612000	ZNF genes & repeats	Fetal Lung	lung
31	chr11:108611800-108612200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
32	chr11:108611800-108612600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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