Variant report

Variant	rs11217396
Chromosome Location	chr11:119556347-119556348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:119549707..119551883-chr11:119554689..119557483,2	K562	blood:
2	chr11:119551176..119553833-chr11:119555114..119557343,2	K562	blood:
3	chr11:119553949..119556596-chr11:119559313..119561537,3	MCF-7	breast:
4	chr11:119546104..119548755-chr11:119553432..119556397,3	MCF-7	breast:
5	chr11:119554561..119556794-chr11:119570560..119572885,2	MCF-7	breast:
6	chr11:119550355..119557178-chr11:119597809..119601667,9	MCF-7	breast:
7	chr11:119548530..119557660-chr11:119596856..119602607,12	MCF-7	breast:
8	chr11:119554400..119557288-chr11:119589688..119591871,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110400	Chromatin interaction
ENSG00000254854	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10892430	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10892431	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10892432	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11217386	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11217389	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11217394	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11217395	1.00[AFR][1000 genomes]
rs11217398	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11217399	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11217400	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11217401	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11217402	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11217403	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11217406	1.00[ASN][1000 genomes]
rs11217407	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11217409	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11217412	0.93[ASN][1000 genomes]
rs12222517	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12577411	1.00[AFR][1000 genomes]
rs12577412	1.00[AFR][1000 genomes]
rs17123203	1.00[ASN][1000 genomes]
rs57088022	1.00[ASN][1000 genomes]
rs58117702	1.00[ASN][1000 genomes]
rs60865388	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv984471	chr11:119505802-119568473	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119549400-119558200	Weak transcription	Ovary	ovary
2	chr11:119550200-119557200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:119550200-119567400	Enhancers	Esophagus	oesophagus
4	chr11:119550800-119559400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr11:119551200-119558200	Enhancers	Pancreas	Pancrea
6	chr11:119551600-119567400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:119552000-119556600	Weak transcription	Liver	Liver
8	chr11:119552000-119560000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:119552200-119557000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:119552200-119557400	Weak transcription	Primary B cells from cord blood	blood
11	chr11:119552600-119558000	Weak transcription	Brain Anterior Caudate	brain
12	chr11:119553800-119556400	Enhancers	Right Ventricle	heart
13	chr11:119553800-119556600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:119553800-119556600	Enhancers	GM12878-XiMat	blood
15	chr11:119553800-119558600	Enhancers	Spleen	Spleen
16	chr11:119553800-119565200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:119554000-119556400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:119554200-119556400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr11:119554200-119556800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:119554200-119557800	Genic enhancers	Fetal Intestine Small	intestine
21	chr11:119554400-119556400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr11:119554400-119556600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:119554400-119558600	Enhancers	Fetal Thymus	thymus
24	chr11:119554600-119556800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr11:119554600-119556800	Enhancers	Lung	lung
26	chr11:119554600-119557000	Enhancers	Brain Substantia Nigra	brain
27	chr11:119554600-119557600	Enhancers	Duodenum Mucosa	Duodenum
28	chr11:119554600-119560200	Enhancers	Brain Cingulate Gyrus	brain
29	chr11:119554600-119560400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr11:119554600-119566400	Enhancers	Fetal Muscle Leg	muscle
31	chr11:119554800-119556400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:119554800-119556600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:119554800-119557800	Weak transcription	Fetal Brain Male	brain
34	chr11:119554800-119559200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr11:119554800-119559400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr11:119554800-119559400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:119554800-119559600	Enhancers	Brain Germinal Matrix	brain
38	chr11:119554800-119560000	Enhancers	Brain Angular Gyrus	brain
39	chr11:119554800-119561000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr11:119555000-119557400	Enhancers	HepG2	liver
41	chr11:119555000-119559000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:119555000-119559400	Bivalent Enhancer	Fetal Stomach	stomach
43	chr11:119555200-119556600	Enhancers	H9 Cell Line	embryonic stem cell
44	chr11:119555200-119557400	Enhancers	NHEK	skin
45	chr11:119555200-119557600	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr11:119555200-119559400	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr11:119555200-119559800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:119555200-119560000	Enhancers	Fetal Muscle Trunk	muscle
49	chr11:119555200-119562600	Enhancers	HMEC	breast
50	chr11:119555400-119556400	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links