Variant report

Variant	rs11217412
Chromosome Location	chr11:119567831-119567832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119551416..119553458-chr11:119566192..119569088,2	MCF-7	breast:
2	chr11:119561073..119563172-chr11:119565321..119568250,2	K562	blood:
3	chr11:119567595..119569306-chr11:119571218..119572844,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10892430	0.93[ASN][1000 genomes]
rs10892431	0.93[ASN][1000 genomes]
rs10892432	0.93[ASN][1000 genomes]
rs11217386	0.93[ASN][1000 genomes]
rs11217389	0.93[ASN][1000 genomes]
rs11217394	0.93[ASN][1000 genomes]
rs11217396	0.93[ASN][1000 genomes]
rs11217398	0.93[ASN][1000 genomes]
rs11217399	0.93[ASN][1000 genomes]
rs11217400	0.93[ASN][1000 genomes]
rs11217401	0.93[ASN][1000 genomes]
rs11217402	0.93[ASN][1000 genomes]
rs11217403	0.93[ASN][1000 genomes]
rs11217406	0.93[ASN][1000 genomes]
rs11217407	0.93[ASN][1000 genomes]
rs11217409	0.93[ASN][1000 genomes]
rs12222517	0.93[ASN][1000 genomes]
rs17123203	0.93[ASN][1000 genomes]
rs57088022	0.93[ASN][1000 genomes]
rs58117702	0.93[ASN][1000 genomes]
rs60865388	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv984471	chr11:119505802-119568473	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv468880	chr11:119564496-119588062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv556471	chr11:119564496-119588062	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119555800-119568800	Weak transcription	Left Ventricle	heart
2	chr11:119556000-119568600	Weak transcription	Right Atrium	heart
3	chr11:119556000-119571600	Weak transcription	NHLF	lung
4	chr11:119559800-119570200	Enhancers	Fetal Thymus	thymus
5	chr11:119560400-119569600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:119561000-119580600	Weak transcription	Fetal Kidney	kidney
7	chr11:119561400-119568800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:119561800-119568400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:119561800-119568800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:119561800-119577600	Enhancers	Brain Hippocampus Middle	brain
11	chr11:119562000-119568600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:119562000-119578400	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:119562400-119571000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:119562400-119571000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr11:119563000-119568600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:119563200-119578400	Genic enhancers	Fetal Intestine Small	intestine
17	chr11:119563400-119568400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:119563600-119574000	Enhancers	Placenta	Placenta
19	chr11:119564200-119578400	Enhancers	Fetal Intestine Large	intestine
20	chr11:119564800-119571800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr11:119565000-119568400	Weak transcription	Lung	lung
22	chr11:119565000-119569400	Weak transcription	Fetal Brain Female	brain
23	chr11:119565200-119582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:119565400-119568200	Weak transcription	Adipose Nuclei	Adipose
25	chr11:119565400-119569400	Weak transcription	Brain Germinal Matrix	brain
26	chr11:119565400-119571400	Weak transcription	NH-A	brain
27	chr11:119565400-119571600	Weak transcription	Primary B cells from cord blood	blood
28	chr11:119565800-119568600	Weak transcription	Gastric	stomach
29	chr11:119565800-119569600	Weak transcription	Brain Anterior Caudate	brain
30	chr11:119565800-119569800	Weak transcription	Pancreas	Pancrea
31	chr11:119565800-119572400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr11:119566200-119568000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr11:119566200-119568400	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr11:119566200-119568600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:119566400-119568600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:119566400-119569400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:119566400-119569600	Weak transcription	Brain Angular Gyrus	brain
38	chr11:119566400-119569800	Weak transcription	Liver	Liver
39	chr11:119566600-119569000	Weak transcription	Brain Substantia Nigra	brain
40	chr11:119567000-119568200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:119567000-119568600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr11:119567000-119572400	Enhancers	Stomach Mucosa	stomach
43	chr11:119567200-119568200	Flanking Active TSS	NHEK	skin
44	chr11:119567200-119568600	Enhancers	H9 Cell Line	embryonic stem cell
45	chr11:119567200-119568800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:119567200-119569000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:119567200-119569400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:119567200-119571800	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr11:119567200-119573200	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr11:119567200-119573600	Enhancers	Small Intestine	intestine

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