Variant report

Variant	rs11217417
Chromosome Location	chr11:119581402-119581403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11217424	1.00[AMR][1000 genomes]
rs11217425	1.00[AMR][1000 genomes]
rs12295549	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4533046	1.00[AMR][1000 genomes]
rs4938714	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv468880	chr11:119564496-119588062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv556471	chr11:119564496-119588062	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119565200-119582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:119568400-119587000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:119568600-119590400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:119572600-119592000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:119573000-119591800	Weak transcription	Left Ventricle	heart
6	chr11:119574000-119583200	Weak transcription	Placenta	Placenta
7	chr11:119574000-119597200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:119575200-119591600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:119576800-119587200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:119577400-119583000	Weak transcription	Fetal Heart	heart
11	chr11:119577600-119582400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:119577800-119583400	Weak transcription	Stomach Mucosa	stomach
13	chr11:119578000-119582400	Weak transcription	Pancreas	Pancrea
14	chr11:119578000-119583600	Weak transcription	Gastric	stomach
15	chr11:119578000-119584800	Weak transcription	Right Ventricle	heart
16	chr11:119579400-119581800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:119579600-119589200	Genic enhancers	Fetal Intestine Small	intestine
18	chr11:119580000-119581600	Enhancers	Brain Angular Gyrus	brain
19	chr11:119580000-119583400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:119580800-119581800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:119580800-119581800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:119580800-119582400	Weak transcription	Liver	Liver
23	chr11:119580800-119582600	Weak transcription	Primary B cells from cord blood	blood
24	chr11:119580800-119583400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:119580800-119597000	Weak transcription	Lung	lung
26	chr11:119581000-119581600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:119581000-119581600	Enhancers	Brain Germinal Matrix	brain
28	chr11:119581000-119581600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr11:119581000-119581600	Enhancers	Fetal Muscle Leg	muscle
30	chr11:119581000-119582200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:119581000-119582200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:119581000-119582200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr11:119581000-119582400	Weak transcription	Fetal Intestine Large	intestine
34	chr11:119581000-119582400	Weak transcription	Fetal Thymus	thymus
35	chr11:119581000-119582800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr11:119581000-119582800	Weak transcription	Spleen	Spleen
37	chr11:119581000-119583200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr11:119581000-119583200	Weak transcription	Thymus	Thymus
39	chr11:119581000-119583400	Strong transcription	Esophagus	oesophagus
40	chr11:119581000-119583600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr11:119581000-119583800	Enhancers	Fetal Brain Male	brain
42	chr11:119581000-119584200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:119581000-119584400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr11:119581000-119584400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:119581000-119584400	Weak transcription	Small Intestine	intestine
46	chr11:119581000-119586400	Weak transcription	Ovary	ovary
47	chr11:119581000-119591600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:119581000-119591600	Weak transcription	Colonic Mucosa	Colon
49	chr11:119581200-119581800	Enhancers	Fetal Brain Female	brain
50	chr11:119581200-119582200	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links