Variant report

Variant	rs4938714
Chromosome Location	chr11:119574695-119574696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119571255..119574750-chr11:119575063..119576895,3	MCF-7	breast:
2	chr11:119568716..119570438-chr11:119574032..119575735,2	MCF-7	breast:
3	chr11:119573833..119575593-chr11:119596790..119599560,2	MCF-7	breast:
4	chr11:119572643..119574728-chr11:119576925..119579390,2	MCF-7	breast:
5	chr11:119568589..119571498-chr11:119574354..119576763,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110400	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11217417	1.00[AMR][1000 genomes]
rs11217424	1.00[AMR][1000 genomes]
rs11217425	1.00[AMR][1000 genomes]
rs12295549	1.00[AMR][1000 genomes]
rs4533046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4938715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57009202	1.00[EUR][1000 genomes]
rs6589768	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv468880	chr11:119564496-119588062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv556471	chr11:119564496-119588062	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119561000-119580600	Weak transcription	Fetal Kidney	kidney
2	chr11:119561800-119577600	Enhancers	Brain Hippocampus Middle	brain
3	chr11:119562000-119578400	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:119563200-119578400	Genic enhancers	Fetal Intestine Small	intestine
5	chr11:119564200-119578400	Enhancers	Fetal Intestine Large	intestine
6	chr11:119565200-119582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:119567400-119575000	Enhancers	Fetal Muscle Trunk	muscle
8	chr11:119567400-119576600	Weak transcription	Fetal Heart	heart
9	chr11:119567400-119579000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:119568000-119580600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:119568400-119575600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:119568400-119580600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:119568400-119587000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:119568600-119580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:119568600-119580600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:119568600-119590400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:119568800-119576800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:119569800-119575000	Enhancers	Pancreas	Pancrea
19	chr11:119570000-119576200	Weak transcription	Fetal Stomach	stomach
20	chr11:119570000-119579200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:119570800-119574800	Enhancers	Brain Cingulate Gyrus	brain
22	chr11:119571000-119574800	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr11:119571800-119576200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:119571800-119576600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:119571800-119579600	Weak transcription	NH-A	brain
26	chr11:119571800-119580000	Weak transcription	Colonic Mucosa	Colon
27	chr11:119572200-119577800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:119572400-119574800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr11:119572400-119575400	Weak transcription	Stomach Mucosa	stomach
30	chr11:119572600-119574800	Enhancers	Brain Anterior Caudate	brain
31	chr11:119572600-119592000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:119572800-119575000	Enhancers	Brain Substantia Nigra	brain
33	chr11:119572800-119577600	Weak transcription	Right Ventricle	heart
34	chr11:119572800-119580000	Weak transcription	Lung	lung
35	chr11:119573000-119575800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:119573000-119577600	Weak transcription	HepG2	liver
37	chr11:119573000-119578000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr11:119573000-119591800	Weak transcription	Left Ventricle	heart
39	chr11:119573200-119575400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:119573200-119575600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:119573200-119576400	Weak transcription	Fetal Brain Male	brain
42	chr11:119573200-119580600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:119573400-119576600	Weak transcription	Fetal Brain Female	brain
44	chr11:119573600-119575000	Strong transcription	NHEK	skin
45	chr11:119573600-119575800	Weak transcription	Small Intestine	intestine
46	chr11:119573600-119578200	Weak transcription	Adipose Nuclei	Adipose
47	chr11:119573800-119574800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:119573800-119576800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:119573800-119576800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:119573800-119579600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links