Variant report

Variant	rs6589768
Chromosome Location	chr11:119572865-119572866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119571255..119574750-chr11:119575063..119576895,3	MCF-7	breast:
2	chr11:119572643..119574728-chr11:119576925..119579390,2	MCF-7	breast:
3	chr11:119554561..119556794-chr11:119570560..119572885,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11604978	1.00[MEX][hapmap]
rs4533046	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4938714	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938715	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57009202	1.00[EUR][1000 genomes]
rs7122738	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs7129419	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv468880	chr11:119564496-119588062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv556471	chr11:119564496-119588062	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119561000-119580600	Weak transcription	Fetal Kidney	kidney
2	chr11:119561800-119577600	Enhancers	Brain Hippocampus Middle	brain
3	chr11:119562000-119578400	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:119563200-119578400	Genic enhancers	Fetal Intestine Small	intestine
5	chr11:119563600-119574000	Enhancers	Placenta	Placenta
6	chr11:119564200-119578400	Enhancers	Fetal Intestine Large	intestine
7	chr11:119565200-119582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:119567200-119573200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:119567200-119573600	Enhancers	Small Intestine	intestine
10	chr11:119567400-119573400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr11:119567400-119574400	Enhancers	Fetal Muscle Leg	muscle
12	chr11:119567400-119575000	Enhancers	Fetal Muscle Trunk	muscle
13	chr11:119567400-119576600	Weak transcription	Fetal Heart	heart
14	chr11:119567400-119579000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:119568000-119580600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:119568200-119573600	Enhancers	Adipose Nuclei	Adipose
17	chr11:119568400-119573800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:119568400-119575600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:119568400-119580600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:119568400-119587000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:119568600-119574200	Enhancers	Esophagus	oesophagus
22	chr11:119568600-119574600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:119568600-119580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:119568600-119580600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:119568600-119590400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:119568800-119574200	Enhancers	HMEC	breast
27	chr11:119568800-119576800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:119569200-119573600	Genic enhancers	NHEK	skin
29	chr11:119569600-119574400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:119569800-119574200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:119569800-119575000	Enhancers	Pancreas	Pancrea
32	chr11:119570000-119576200	Weak transcription	Fetal Stomach	stomach
33	chr11:119570000-119579200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr11:119570600-119573000	Enhancers	HepG2	liver
35	chr11:119570600-119573800	Weak transcription	Spleen	Spleen
36	chr11:119570600-119574000	Weak transcription	Gastric	stomach
37	chr11:119570800-119574800	Enhancers	Brain Cingulate Gyrus	brain
38	chr11:119571000-119574800	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr11:119571200-119573200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr11:119571600-119573200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:119571600-119573200	Enhancers	NHLF	lung
42	chr11:119571600-119574200	Enhancers	HSMM	muscle
43	chr11:119571800-119573000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:119571800-119576200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr11:119571800-119576600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr11:119571800-119579600	Weak transcription	NH-A	brain
47	chr11:119571800-119580000	Weak transcription	Colonic Mucosa	Colon
48	chr11:119572000-119573200	Weak transcription	Fetal Thymus	thymus
49	chr11:119572000-119574000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:119572000-119574400	Enhancers	HSMMtube	muscle

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