Variant report

Variant	rs7122738
Chromosome Location	chr11:119547189-119547190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4533046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4533047	0.82[CHB][hapmap]
rs4938714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4938715	0.95[ASN][1000 genomes]
rs6589768	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv984471	chr11:119505802-119568473	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119535200-119552600	Weak transcription	HepG2	liver
2	chr11:119541800-119548600	Strong transcription	H9 Cell Line	embryonic stem cell
3	chr11:119541800-119548600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:119541800-119548800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:119541800-119549000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:119542200-119547800	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:119542200-119548600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:119542200-119551400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:119542400-119547200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:119542600-119548400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:119542800-119547200	Weak transcription	Osteobl	bone
12	chr11:119542800-119547400	Weak transcription	HSMMtube	muscle
13	chr11:119543000-119547200	Weak transcription	NHDF-Ad	bronchial
14	chr11:119543000-119548400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:119543000-119548800	Weak transcription	Ovary	ovary
16	chr11:119543000-119551400	Weak transcription	Fetal Heart	heart
17	chr11:119543000-119551400	Weak transcription	Right Atrium	heart
18	chr11:119543200-119548400	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr11:119543200-119551600	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:119543400-119547800	Weak transcription	Fetal Kidney	kidney
21	chr11:119543400-119551000	Weak transcription	Stomach Mucosa	stomach
22	chr11:119543600-119547600	Weak transcription	Liver	Liver
23	chr11:119543600-119549400	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr11:119543600-119551400	Weak transcription	Fetal Brain Male	brain
25	chr11:119543800-119547200	Strong transcription	NHEK	skin
26	chr11:119543800-119549400	Strong transcription	Gastric	stomach
27	chr11:119544000-119548200	Strong transcription	Fetal Intestine Large	intestine
28	chr11:119544000-119549200	Strong transcription	Brain Cingulate Gyrus	brain
29	chr11:119544000-119549400	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:119544200-119548200	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:119544200-119548400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:119544200-119548600	Strong transcription	Brain Germinal Matrix	brain
33	chr11:119544200-119549400	Strong transcription	Right Ventricle	heart
34	chr11:119544400-119547200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:119544400-119547200	Weak transcription	Colonic Mucosa	Colon
36	chr11:119544400-119547400	Weak transcription	Fetal Lung	lung
37	chr11:119544400-119549600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:119544600-119548200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:119544600-119548200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:119544600-119548600	Strong transcription	Fetal Brain Female	brain
41	chr11:119544600-119549400	Strong transcription	Brain Angular Gyrus	brain
42	chr11:119544800-119547800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:119544800-119548000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:119544800-119548400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:119544800-119548600	Strong transcription	Fetal Intestine Small	intestine
46	chr11:119544800-119548600	Strong transcription	Fetal Stomach	stomach
47	chr11:119544800-119549000	Strong transcription	Placenta	Placenta
48	chr11:119545000-119547600	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr11:119545000-119548400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:119545000-119549400	Strong transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links