Variant report

Variant	rs11217635
Chromosome Location	chr11:119890962-119890963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10431043	0.88[ASN][1000 genomes]
rs10892514	0.99[ASN][1000 genomes]
rs10892519	0.92[ASN][1000 genomes]
rs10892521	0.91[ASN][1000 genomes]
rs11217630	0.96[ASN][1000 genomes]
rs11217633	0.99[ASN][1000 genomes]
rs11217636	0.99[ASN][1000 genomes]
rs11217637	0.99[ASN][1000 genomes]
rs11217647	0.93[ASN][1000 genomes]
rs11217665	0.87[ASN][1000 genomes]
rs11217666	0.87[ASN][1000 genomes]
rs12223988	0.99[ASN][1000 genomes]
rs12225953	0.87[ASN][1000 genomes]
rs12573999	0.92[ASN][1000 genomes]
rs12574203	0.95[ASN][1000 genomes]
rs12575245	0.89[ASN][1000 genomes]
rs56745971	0.99[ASN][1000 genomes]
rs56778655	0.98[ASN][1000 genomes]
rs57510602	1.00[ASN][1000 genomes]
rs57589469	0.92[ASN][1000 genomes]
rs58844530	0.88[ASN][1000 genomes]
rs60270569	0.91[ASN][1000 genomes]
rs60967975	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv524406	chr11:119873404-119893179	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2762948	chr11:119876596-119901422	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119883200-119893400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119884800-119893600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:119884800-119893800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:119888200-119893400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119888400-119893600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:119888600-119891800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:119888800-119893400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:119888800-119893600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:119889000-119893200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:119889000-119893400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:119889000-119893400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:119889000-119893600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:119889000-119893600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:119889200-119893000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:119889200-119893000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:119890400-119891800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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