Variant report

Variant	rs10892519
Chromosome Location	chr11:119905811-119905812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10431043	0.96[ASN][1000 genomes]
rs10892514	0.93[ASN][1000 genomes]
rs10892521	0.99[ASN][1000 genomes]
rs11217630	0.88[ASN][1000 genomes]
rs11217633	0.91[ASN][1000 genomes]
rs11217635	0.92[ASN][1000 genomes]
rs11217636	0.93[ASN][1000 genomes]
rs11217637	0.93[ASN][1000 genomes]
rs11217647	0.99[ASN][1000 genomes]
rs11217665	0.95[ASN][1000 genomes]
rs11217666	0.95[ASN][1000 genomes]
rs12223988	0.93[ASN][1000 genomes]
rs12225953	0.95[ASN][1000 genomes]
rs12573999	1.00[ASN][1000 genomes]
rs12574203	0.95[ASN][1000 genomes]
rs12575245	0.97[ASN][1000 genomes]
rs56745971	0.93[ASN][1000 genomes]
rs56778655	0.94[ASN][1000 genomes]
rs57510602	0.92[ASN][1000 genomes]
rs57589469	1.00[ASN][1000 genomes]
rs58844530	0.96[ASN][1000 genomes]
rs59838357	0.83[ASN][1000 genomes]
rs60270569	0.87[ASN][1000 genomes]
rs60914924	0.87[ASN][1000 genomes]
rs60967975	0.94[ASN][1000 genomes]
rs61218458	0.86[ASN][1000 genomes]
rs61602379	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119902000-119906600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:119902400-119907000	Enhancers	Fetal Muscle Leg	muscle
3	chr11:119903000-119906000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119905000-119906000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:119905000-119906600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:119905200-119906000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:119905200-119906200	Enhancers	Brain Hippocampus Middle	brain
8	chr11:119905200-119906600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:119905200-119906600	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:119905200-119906600	Enhancers	Brain Germinal Matrix	brain
11	chr11:119905200-119907000	Enhancers	Fetal Muscle Trunk	muscle
12	chr11:119905400-119906600	Enhancers	Fetal Stomach	stomach
13	chr11:119905600-119906400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr11:119905600-119906400	Enhancers	Fetal Brain Female	brain
15	chr11:119905800-119906400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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