Variant report

Variant	rs59838357
Chromosome Location	chr11:119943044-119943045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10431043	0.86[ASN][1000 genomes]
rs10892519	0.83[ASN][1000 genomes]
rs10892521	0.82[ASN][1000 genomes]
rs11217638	1.00[AMR][1000 genomes]
rs11217647	0.83[ASN][1000 genomes]
rs11217665	0.87[ASN][1000 genomes]
rs11217666	0.87[ASN][1000 genomes]
rs12225953	0.87[ASN][1000 genomes]
rs12274384	1.00[AMR][1000 genomes]
rs12283465	1.00[AMR][1000 genomes]
rs12287377	1.00[AMR][1000 genomes]
rs12295384	1.00[AMR][1000 genomes]
rs12573999	0.83[ASN][1000 genomes]
rs57589469	0.83[ASN][1000 genomes]
rs58844530	0.86[ASN][1000 genomes]
rs60914924	0.95[ASN][1000 genomes]
rs61218458	0.96[ASN][1000 genomes]
rs61602379	0.95[ASN][1000 genomes]
rs9651668	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119938800-119951600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:119940200-119943200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:119940400-119943200	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:119940400-119943400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:119940400-119946600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:119942400-119943200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:119942400-119943600	Enhancers	Brain Substantia Nigra	brain
8	chr11:119942600-119945200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:119943000-119944000	Enhancers	Brain Angular Gyrus	brain
10	chr11:119943000-119944200	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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