Variant report

Variant	rs11217638
Chromosome Location	chr11:119895728-119895729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12274384	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283465	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287377	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295384	1.00[AMR][1000 genomes]
rs59838357	1.00[AMR][1000 genomes]
rs9651668	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2762948	chr11:119876596-119901422	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119891800-119897000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:119893000-119896000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:119893000-119896600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:119893200-119896200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:119893400-119896200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:119893400-119896400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:119893600-119896200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:119893600-119896400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:119893600-119896400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:119894200-119896400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:119894600-119899400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:119895000-119896000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:119895000-119896200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:119895000-119896200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:119895200-119896400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:119895400-119896200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr11:119895400-119896200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:119895400-119896600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:119895400-119896600	Enhancers	HMEC	breast
20	chr11:119895600-119896200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:119895600-119896400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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