Variant report

Variant	rs11217712
Chromosome Location	chr11:120030227-120030228
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119996313..119998816-chr11:120028388..120030589,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137699	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10790369	0.86[ASN][1000 genomes]
rs10892544	0.86[ASN][1000 genomes]
rs10892545	0.86[ASN][1000 genomes]
rs11217702	0.97[ASN][1000 genomes]
rs11217705	0.98[ASN][1000 genomes]
rs11217706	0.94[ASN][1000 genomes]
rs11217707	0.98[ASN][1000 genomes]
rs11217708	1.00[ASN][1000 genomes]
rs11217710	1.00[ASN][1000 genomes]
rs11217711	1.00[ASN][1000 genomes]
rs11217713	1.00[ASN][1000 genomes]
rs11217715	1.00[ASN][1000 genomes]
rs11217716	1.00[ASN][1000 genomes]
rs11217718	1.00[ASN][1000 genomes]
rs11217719	1.00[ASN][1000 genomes]
rs11217720	1.00[ASN][1000 genomes]
rs11217721	1.00[ASN][1000 genomes]
rs11217722	0.97[ASN][1000 genomes]
rs11217723	1.00[ASN][1000 genomes]
rs11217724	1.00[ASN][1000 genomes]
rs11217725	0.94[ASN][1000 genomes]
rs11217726	1.00[ASN][1000 genomes]
rs11217727	1.00[ASN][1000 genomes]
rs11217728	1.00[ASN][1000 genomes]
rs11217729	1.00[ASN][1000 genomes]
rs11217730	1.00[ASN][1000 genomes]
rs11217731	1.00[ASN][1000 genomes]
rs11217732	1.00[ASN][1000 genomes]
rs11217733	1.00[ASN][1000 genomes]
rs11217734	1.00[ASN][1000 genomes]
rs11217735	1.00[ASN][1000 genomes]
rs11217736	1.00[ASN][1000 genomes]
rs11217737	1.00[ASN][1000 genomes]
rs11217738	1.00[ASN][1000 genomes]
rs11217739	1.00[ASN][1000 genomes]
rs11217740	0.86[ASN][1000 genomes]
rs11217741	0.86[ASN][1000 genomes]
rs11217742	0.84[ASN][1000 genomes]
rs11217743	0.86[ASN][1000 genomes]
rs11217744	0.86[ASN][1000 genomes]
rs11217745	0.86[ASN][1000 genomes]
rs11217746	0.86[ASN][1000 genomes]
rs11217748	0.86[ASN][1000 genomes]
rs11217749	0.86[ASN][1000 genomes]
rs11217750	0.86[ASN][1000 genomes]
rs11217751	0.86[ASN][1000 genomes]
rs11217753	0.86[ASN][1000 genomes]
rs11217754	0.86[ASN][1000 genomes]
rs11535714	1.00[ASN][1000 genomes]
rs12049837	0.86[ASN][1000 genomes]
rs12225418	0.86[ASN][1000 genomes]
rs12274981	0.82[ASN][1000 genomes]
rs12281157	0.86[ASN][1000 genomes]
rs12283165	0.86[ASN][1000 genomes]
rs12417084	0.98[ASN][1000 genomes]
rs12417094	1.00[ASN][1000 genomes]
rs12417234	0.98[ASN][1000 genomes]
rs12418352	1.00[ASN][1000 genomes]
rs12419511	0.98[ASN][1000 genomes]
rs12419976	1.00[ASN][1000 genomes]
rs12419985	1.00[ASN][1000 genomes]
rs12420985	0.84[ASN][1000 genomes]
rs12421218	1.00[ASN][1000 genomes]
rs12790585	0.85[EUR][1000 genomes]
rs12791393	0.86[EUR][1000 genomes]
rs12792820	0.91[EUR][1000 genomes]
rs12795599	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12799647	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12802402	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12802652	0.94[EUR][1000 genomes]
rs12808627	0.94[EUR][1000 genomes]
rs12808972	0.86[EUR][1000 genomes]
rs2076765	0.92[EUR][1000 genomes]
rs34981150	0.98[ASN][1000 genomes]
rs35652094	0.94[EUR][1000 genomes]
rs3740728	0.86[ASN][1000 genomes]
rs3740729	0.86[ASN][1000 genomes]
rs3740730	0.86[ASN][1000 genomes]
rs3740731	0.86[ASN][1000 genomes]
rs679074	1.00[ASN][1000 genomes]
rs73575945	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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