Variant report

Variant	rs11217746
Chromosome Location	chr11:120043411-120043412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120043093..120043613-chr11:120053019..120053889,2	MCF-7	breast:
2	chr11:120041530..120043873-chr11:120106114..120109584,5	K562	blood:
3	chr11:120043046..120043571-chr11:120100218..120100788,2	MCF-7	breast:
4	chr11:120042978..120043613-chr11:120105435..120106323,2	K562	blood:
5	chr11:120042666..120043739-chr11:120100070..120101150,7	K562	blood:
6	chr11:120042598..120043820-chr11:120173442..120174406,6	K562	blood:
7	chr11:120041545..120045663-chr11:120098074..120102653,6	MCF-7	breast:
8	chr11:120042758..120043591-chr11:120170404..120171318,5	K562	blood:
9	chr11:120042675..120043623-chr11:120099973..120101146,10	MCF-7	breast:
10	chr11:120042631..120043429-chr11:120173449..120174511,3	MCF-7	breast:
11	chr11:120041303..120043768-chr11:120091508..120094206,2	MCF-7	breast:
12	chr11:120043099..120045650-chr11:120048774..120051644,2	K562	blood:
13	chr11:120042899..120045222-chr11:120108366..120110220,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10790369	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11217701	0.84[AMR][1000 genomes]
rs11217702	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11217705	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11217706	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11217707	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11217708	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217710	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217711	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217712	0.86[ASN][1000 genomes]
rs11217713	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217715	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217716	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217718	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217719	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217720	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217721	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217722	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11217723	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217724	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217725	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11217726	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217727	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217728	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217729	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217730	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217731	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217732	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217733	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217734	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217735	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217736	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217737	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217738	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217739	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217740	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217741	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217742	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217743	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217744	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11217748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217749	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217750	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217751	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11535714	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12049837	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224041	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12224472	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12225418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12281157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291620	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12417084	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12417094	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12417234	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12418352	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12419511	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12419830	0.84[AMR][1000 genomes]
rs12419976	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12419985	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12420985	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12421218	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12422179	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34981150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3740728	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679074	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7118957	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119349	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119458	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575945	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120040600-120049000	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:120040600-120049600	Weak transcription	Right Atrium	heart
3	chr11:120042000-120043600	Enhancers	Spleen	Spleen
4	chr11:120042600-120044600	Enhancers	Brain Angular Gyrus	brain
5	chr11:120042800-120043600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr11:120042800-120043600	Enhancers	Brain Hippocampus Middle	brain
7	chr11:120042800-120043600	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:120042800-120043800	Enhancers	Liver	Liver
9	chr11:120042800-120044200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr11:120042800-120044600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:120042800-120045000	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:120042800-120045000	Enhancers	Fetal Intestine Large	intestine
13	chr11:120043000-120043600	Bivalent Enhancer	Primary B cells from cord blood	blood
14	chr11:120043000-120043600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:120043000-120043600	Enhancers	HepG2	liver
16	chr11:120043000-120044000	Enhancers	Primary hematopoietic stem cells	blood
17	chr11:120043000-120044000	Enhancers	Fetal Intestine Small	intestine
18	chr11:120043000-120044200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
19	chr11:120043000-120044600	Enhancers	Brain Anterior Caudate	brain
20	chr11:120043000-120044600	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr11:120043000-120045000	Enhancers	Fetal Stomach	stomach
22	chr11:120043200-120043600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
23	chr11:120043200-120043600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:120043200-120043600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
25	chr11:120043200-120043600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:120043200-120043600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:120043200-120043600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:120043200-120043600	Bivalent Enhancer	Adipose Nuclei	Adipose
29	chr11:120043200-120043600	Enhancers	Esophagus	oesophagus
30	chr11:120043200-120043600	Enhancers	Pancreas	Pancrea
31	chr11:120043200-120043600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
32	chr11:120043200-120043600	Bivalent Enhancer	GM12878-XiMat	blood
33	chr11:120043200-120043800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
34	chr11:120043200-120044200	Enhancers	Fetal Brain Male	brain
35	chr11:120043200-120044400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr11:120043200-120045000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:120043200-120045000	Enhancers	Fetal Lung	lung
38	chr11:120043400-120043600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:120043400-120043600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr11:120043400-120043600	Enhancers	Colonic Mucosa	Colon
41	chr11:120043400-120043600	Weak transcription	Gastric	stomach
42	chr11:120043400-120043600	Flanking Active TSS	Rectal Smooth Muscle	rectum
43	chr11:120043400-120043800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:120043400-120043800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
45	chr11:120043400-120044000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:120043400-120044000	Enhancers	Fetal Heart	heart
47	chr11:120043400-120044200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:120043400-120044200	Weak transcription	Brain Substantia Nigra	brain
49	chr11:120043400-120044800	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr11:120043400-120045600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links