Variant report

Variant	rs11217773
Chromosome Location	chr11:120115450-120115451
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
2	chr11:120106019..120110812-chr11:120113040..120119064,10	MCF-7	breast:
3	chr11:120112920..120116409-chr11:120169990..120174886,6	MCF-7	breast:
4	chr11:120114505..120116573-chr11:120148614..120150508,2	MCF-7	breast:
5	chr11:120114133..120115975-chr11:120140690..120143649,2	K562	blood:

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11217771	0.93[EUR][1000 genomes]
rs2252520	0.81[ASN][1000 genomes]
rs56667128	0.93[EUR][1000 genomes]
rs59565018	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120112600-120119600	Weak transcription	Esophagus	oesophagus
2	chr11:120114400-120119000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:120114800-120116600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:120115000-120116200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:120115000-120116600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:120115200-120115600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:120115200-120115600	Bivalent Enhancer	NH-A	brain
8	chr11:120115200-120115800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr11:120115200-120115800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:120115200-120117000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr11:120115200-120117000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr11:120115200-120117200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr11:120115200-120117400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:120115200-120117400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:120115200-120117600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:120115200-120117600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:120115200-120119000	Enhancers	GM12878-XiMat	blood
18	chr11:120115400-120115600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:120115400-120115600	Enhancers	HMEC	breast
20	chr11:120115400-120115800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:120115400-120116000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:120115400-120116400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:120115400-120117400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr11:120115400-120117600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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