Variant report

Variant	rs59565018
Chromosome Location	chr11:120124302-120124303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11217771	0.80[EUR][1000 genomes]
rs11217773	0.86[EUR][1000 genomes]
rs56667128	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120116000-120124600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:120117000-120125400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:120119400-120124400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:120119800-120125000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:120120800-120125000	Weak transcription	Brain Germinal Matrix	brain
6	chr11:120121000-120124600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:120121000-120125000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:120121200-120124800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:120121200-120124800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:120121200-120125000	Weak transcription	GM12878-XiMat	blood
11	chr11:120121600-120124400	Enhancers	Fetal Brain Male	brain
12	chr11:120121600-120126800	Weak transcription	Right Ventricle	heart
13	chr11:120123600-120124600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:120123600-120125400	Weak transcription	Fetal Brain Female	brain
15	chr11:120123800-120127200	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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