Variant report

Variant	rs11217796
Chromosome Location	chr11:120162250-120162251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120161703..120163945-chr11:120169306..120172296,3	K562	blood:
2	chr11:120105158..120109707-chr11:120158183..120163088,7	MCF-7	breast:
3	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
4	chr11:120161703..120167886-chr11:120168928..120172296,6	K562	blood:
5	chr11:120106473..120108744-chr11:120160537..120163342,3	MCF-7	breast:
6	chr11:120159549..120163046-chr11:120164212..120166890,3	K562	blood:
7	chr11:120161676..120163879-chr11:120164958..120166654,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10790373	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11217785	0.83[CEU][hapmap];0.83[MEX][hapmap]
rs11217793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11217801	0.84[CHB][hapmap]
rs17123792	0.84[CHB][hapmap]
rs2155811	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4936512	0.94[CEU][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7479050	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7951628	0.80[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120159400-120162600	Weak transcription	Placenta	Placenta
2	chr11:120159600-120163800	Weak transcription	Hela-S3	cervix
3	chr11:120161200-120166400	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:120161400-120162400	Enhancers	Fetal Intestine Large	intestine
5	chr11:120161600-120162400	Enhancers	Fetal Intestine Small	intestine
6	chr11:120161600-120162400	Enhancers	Stomach Mucosa	stomach
7	chr11:120162200-120162400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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