Variant report

Variant	rs11217785
Chromosome Location	chr11:120152591-120152592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120151774..120154252-chr11:120159688..120162065,3	K562	blood:
2	chr11:120126805..120129444-chr11:120151052..120153033,2	MCF-7	breast:
3	chr11:120152442..120154565-chr11:120163007..120165432,2	K562	blood:
4	chr11:120130830..120132794-chr11:120150514..120152868,2	K562	blood:
5	chr11:120151169..120153171-chr11:120166306..120168232,2	K562	blood:
6	chr11:120149912..120152911-chr11:120168871..120171487,3	K562	blood:
7	chr11:120106294..120109068-chr11:120151729..120153765,2	K562	blood:
8	chr11:120141543..120143317-chr11:120150505..120153667,3	K562	blood:
9	chr11:120105904..120109719-chr11:120147377..120154019,10	K562	blood:
10	chr11:120144746..120147673-chr11:120150334..120152904,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10750170	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10790373	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10790374	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11217787	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11217793	0.83[CEU][hapmap];0.88[MEX][hapmap]
rs11217796	0.83[CEU][hapmap];0.83[MEX][hapmap]
rs2155810	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4245211	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4936512	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[ASN][1000 genomes]
rs4936513	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56966127	0.93[ASN][1000 genomes]
rs6589805	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7111185	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7120237	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73578248	0.93[ASN][1000 genomes]
rs744983	0.80[JPT][hapmap]
rs7479050	0.94[ASN][1000 genomes]
rs7951628	1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120149200-120152800	Enhancers	Hela-S3	cervix
2	chr11:120150000-120153000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:120150200-120152600	Enhancers	NHEK	skin
4	chr11:120150200-120154200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:120150400-120152800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:120150400-120153000	Enhancers	Fetal Heart	heart
7	chr11:120150600-120152600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:120150600-120152600	Enhancers	Placenta	Placenta
9	chr11:120151000-120152600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:120151400-120152600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:120151400-120152600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:120151400-120152600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:120151400-120152600	Enhancers	Left Ventricle	heart
14	chr11:120151400-120152600	Enhancers	Stomach Smooth Muscle	stomach
15	chr11:120151400-120152800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:120151400-120153000	Enhancers	Right Atrium	heart
17	chr11:120151600-120152600	Enhancers	Lung	lung
18	chr11:120151600-120152800	Flanking Active TSS	K562	blood
19	chr11:120151600-120153800	Weak transcription	Esophagus	oesophagus
20	chr11:120152000-120152600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr11:120152000-120152600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:120152000-120152600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:120152000-120152800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:120152000-120159600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:120152200-120152600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:120152400-120152800	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links