Variant report

Variant	rs56966127
Chromosome Location	chr11:120163449-120163450
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10750170	0.97[ASN][1000 genomes]
rs10790373	0.90[ASN][1000 genomes]
rs10790374	0.93[ASN][1000 genomes]
rs11217785	0.93[ASN][1000 genomes]
rs11217787	0.92[ASN][1000 genomes]
rs2155810	0.97[ASN][1000 genomes]
rs4245211	0.95[ASN][1000 genomes]
rs4936512	0.90[ASN][1000 genomes]
rs4936513	0.93[ASN][1000 genomes]
rs6589805	0.97[ASN][1000 genomes]
rs7111185	0.97[ASN][1000 genomes]
rs7120237	0.97[ASN][1000 genomes]
rs73578248	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7479050	0.90[ASN][1000 genomes]
rs7951628	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120159600-120163800	Weak transcription	Hela-S3	cervix
2	chr11:120161200-120166400	Enhancers	Duodenum Mucosa	Duodenum
3	chr11:120162400-120165000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:120162400-120165800	Weak transcription	Stomach Mucosa	stomach
5	chr11:120162600-120166800	Enhancers	Placenta	Placenta
6	chr11:120163400-120165200	Bivalent Enhancer	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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