Variant report

Variant	rs11218240
Chromosome Location	chr11:121151902-121151903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10437696	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10790422	0.88[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10790430	0.83[CHB][hapmap];0.90[CHD][hapmap];0.83[LWK][hapmap];0.89[YRI][hapmap]
rs10790431	0.83[CHB][hapmap];0.87[CHD][hapmap];0.83[LWK][hapmap];0.89[YRI][hapmap]
rs10892718	0.86[CHB][hapmap];0.82[YRI][hapmap]
rs11218235	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11218239	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11607048	0.84[EUR][1000 genomes]
rs12295531	0.80[YRI][hapmap]
rs12419764	0.90[ASN][1000 genomes]
rs2060007	0.83[CHB][hapmap];0.89[YRI][hapmap]
rs4144287	0.88[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4935766	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6589869	0.94[ASN][1000 genomes]
rs7108763	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv898426	chr11:121136604-121206354	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121151000-121153000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:121151400-121152000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:121151400-121152200	Enhancers	Lung	lung
4	chr11:121151400-121152400	Enhancers	Esophagus	oesophagus
5	chr11:121151600-121153000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:121151600-121153000	Enhancers	HMEC	breast
7	chr11:121151800-121152000	Enhancers	Adipose Nuclei	Adipose
8	chr11:121151800-121153000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:121151800-121153000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:121151800-121153200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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