Variant report

Variant	rs11218447
Chromosome Location	chr11:121780849-121780850
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10790478	1.00[ASN][1000 genomes]
rs10892783	1.00[ASN][1000 genomes]
rs11218444	0.97[ASN][1000 genomes]
rs11218445	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11218455	1.00[ASN][1000 genomes]
rs11824043	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12146618	1.00[ASN][1000 genomes]
rs12223055	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276089	0.81[AMR][1000 genomes]
rs17337467	1.00[ASN][1000 genomes]
rs1868259	1.00[ASN][1000 genomes]
rs35318161	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35805775	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3862607	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3862610	0.97[ASN][1000 genomes]
rs4102736	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs747915	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11218447	UPK2	cis	cerebellum	SCAN
rs11218447	ASAM	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121780200-121781000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:121780200-121781000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:121780200-121781200	Flanking Active TSS	NHDF-Ad	bronchial
4	chr11:121780800-121781000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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