Variant report

Variant	rs3862607
Chromosome Location	chr11:121774705-121774706
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10790478	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10892783	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11218444	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11218445	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11218447	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11218455	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11824043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146618	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12223055	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17337467	0.97[ASN][1000 genomes]
rs1868259	0.97[ASN][1000 genomes]
rs35318161	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35805775	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3862610	0.94[ASN][1000 genomes]
rs4102736	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747915	0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3862607	ASAM	cis	parietal	SCAN
rs3862607	UPK2	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121767400-121775600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:121767400-121775600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:121769200-121776200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:121770000-121777800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:121772600-121775800	Weak transcription	NHEK	skin
6	chr11:121774000-121775200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:121774200-121774800	Enhancers	Primary B cells from cord blood	blood
8	chr11:121774200-121775400	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:121774400-121775000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr11:121774400-121775200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:121774600-121775200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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