Variant report

Variant	rs11218468
Chromosome Location	chr11:121807552-121807553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11218467	1.00[AMR][1000 genomes]
rs12288682	1.00[AMR][1000 genomes]
rs12290861	1.00[AMR][1000 genomes]
rs12293441	1.00[AMR][1000 genomes]
rs12294006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3354123	chr11:121807392-121809440	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121801400-121813000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:121804000-121808800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:121805800-121809200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:121805800-121809200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:121805800-121809400	Enhancers	HMEC	breast
6	chr11:121806000-121809600	Enhancers	NHDF-Ad	bronchial
7	chr11:121806400-121809200	Enhancers	Osteobl	bone
8	chr11:121806400-121809400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:121806600-121808000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:121806600-121809800	Enhancers	NHEK	skin
11	chr11:121807000-121807800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:121807000-121807800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr11:121807000-121807800	Enhancers	Psoas Muscle	Psoas
14	chr11:121807000-121807800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:121807000-121807800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:121807000-121808000	Enhancers	HSMM	muscle
17	chr11:121807000-121809600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:121807200-121807600	Enhancers	HepG2	liver
19	chr11:121807200-121807800	Enhancers	HSMMtube	muscle
20	chr11:121807200-121808800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:121807400-121807800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:121807400-121807800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:121807400-121807800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:121807400-121807800	Flanking Active TSS	NH-A	brain
25	chr11:121807400-121807800	Flanking Active TSS	NHLF	lung
26	chr11:121807400-121808000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links