Variant report

Variant	rs12293441
Chromosome Location	chr11:121892439-121892440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11218467	1.00[AMR][1000 genomes]
rs11218468	1.00[AMR][1000 genomes]
rs12288682	1.00[AMR][1000 genomes]
rs12290861	1.00[AMR][1000 genomes]
rs12294006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898429	chr11:121833245-121897762	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121890000-121907000	Weak transcription	Brain Anterior Caudate	brain
2	chr11:121890200-121897200	Weak transcription	Osteobl	bone
3	chr11:121890200-121899000	Weak transcription	Fetal Brain Female	brain
4	chr11:121890800-121894600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:121891200-121894600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:121891200-121895000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:121891400-121899200	Weak transcription	Brain Germinal Matrix	brain
8	chr11:121892200-121894600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:121892400-121894600	Weak transcription	NHDF-Ad	bronchial
10	chr11:121892400-121906800	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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