Variant report

Variant	rs11224406
Chromosome Location	chr11:100588550-100588551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100578654..100584539-chr11:100585758..100591241,5	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10431109	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11224383	0.81[ASN][1000 genomes]
rs11224384	0.81[ASN][1000 genomes]
rs11224390	0.81[ASN][1000 genomes]
rs11224393	0.81[ASN][1000 genomes]
rs11224400	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11224402	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11224407	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224408	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224411	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224430	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224436	0.95[EUR][1000 genomes]
rs12221887	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12223958	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12225108	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12226782	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1502283	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61910470	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61910471	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61910472	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61910473	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61910474	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910475	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910477	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910479	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910503	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61910504	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1039852	chr11:99901695-100610533	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv541152	chr11:99901695-100610533	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1043022	chr11:100387466-100610533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv832246	chr11:100426725-100606957	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898327	chr11:100569021-100631075	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100561000-100590200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:100561000-100590600	Weak transcription	Lung	lung
3	chr11:100566800-100590000	Weak transcription	Fetal Stomach	stomach
4	chr11:100572400-100590000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:100572400-100590200	Weak transcription	Placenta	Placenta
6	chr11:100575200-100590000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:100575400-100590200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:100576200-100590200	Weak transcription	Small Intestine	intestine
9	chr11:100580200-100590200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:100580800-100589800	Weak transcription	Fetal Heart	heart
11	chr11:100581000-100589800	Weak transcription	HSMMtube	muscle
12	chr11:100581000-100590000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:100583600-100590000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:100583800-100589800	Weak transcription	Liver	Liver
15	chr11:100584200-100589000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:100584200-100590000	Weak transcription	Fetal Intestine Small	intestine
17	chr11:100584200-100590200	Weak transcription	Fetal Intestine Large	intestine
18	chr11:100584600-100588800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:100585400-100590200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:100585600-100589800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:100585800-100590200	Weak transcription	Right Ventricle	heart
22	chr11:100586200-100588800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:100586200-100589000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:100586200-100589800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:100586400-100589000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:100586400-100589800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:100586400-100590000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:100586400-100590000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:100586400-100590000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:100586400-100590000	Weak transcription	HUVEC	blood vessel
31	chr11:100586400-100590200	Weak transcription	Right Atrium	heart
32	chr11:100586400-100590600	Weak transcription	Fetal Kidney	kidney
33	chr11:100586600-100589800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:100586600-100590000	Weak transcription	Psoas Muscle	Psoas
35	chr11:100586800-100588800	Weak transcription	A549	lung
36	chr11:100586800-100590000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:100586800-100590000	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:100586800-100590000	Weak transcription	Left Ventricle	heart
39	chr11:100586800-100590200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:100586800-100590200	Weak transcription	Spleen	Spleen
41	chr11:100587000-100589800	Weak transcription	Adipose Nuclei	Adipose
42	chr11:100587000-100589800	Weak transcription	NHLF	lung
43	chr11:100587000-100590000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr11:100587000-100590200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:100588000-100588600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:100588000-100588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr11:100588000-100589800	Weak transcription	NHDF-Ad	bronchial
48	chr11:100588200-100588600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:100588200-100588600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:100588200-100589800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links