Variant report

Variant	rs11224407
Chromosome Location	chr11:100590842-100590843
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100578654..100584539-chr11:100585758..100591241,5	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10431109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10488786	1.00[AFR][1000 genomes]
rs11224348	0.85[CEU][hapmap]
rs11224350	0.85[CEU][hapmap]
rs11224351	0.85[CEU][hapmap]
rs11224383	0.81[ASN][1000 genomes]
rs11224384	0.81[ASN][1000 genomes]
rs11224390	0.85[CEU][hapmap];0.81[ASN][1000 genomes]
rs11224393	0.81[ASN][1000 genomes]
rs11224400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11224402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11224406	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224430	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224436	0.95[EUR][1000 genomes]
rs11224442	1.00[AFR][1000 genomes]
rs11224443	1.00[AFR][1000 genomes]
rs11224445	1.00[AFR][1000 genomes]
rs11224446	1.00[AFR][1000 genomes]
rs11224457	1.00[AFR][1000 genomes]
rs11224467	1.00[AFR][1000 genomes]
rs11224471	1.00[AFR][1000 genomes]
rs11224493	1.00[AFR][1000 genomes]
rs11224494	1.00[AFR][1000 genomes]
rs11224495	1.00[AFR][1000 genomes]
rs12221887	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12223958	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12225108	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12226782	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1502283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2897755	1.00[AFR][1000 genomes]
rs517349	1.00[AFR][1000 genomes]
rs581773	1.00[AFR][1000 genomes]
rs61890769	1.00[AFR][1000 genomes]
rs61890770	1.00[AFR][1000 genomes]
rs61890784	1.00[AFR][1000 genomes]
rs61890786	1.00[AFR][1000 genomes]
rs61890806	1.00[AFR][1000 genomes]
rs61890815	1.00[AFR][1000 genomes]
rs61890817	1.00[AFR][1000 genomes]
rs61890819	1.00[AFR][1000 genomes]
rs61890820	1.00[AFR][1000 genomes]
rs61890821	1.00[AFR][1000 genomes]
rs61910470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61910471	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61910472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61910473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61910474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910503	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61910504	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs679012	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1039852	chr11:99901695-100610533	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv541152	chr11:99901695-100610533	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1043022	chr11:100387466-100610533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv832246	chr11:100426725-100606957	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898327	chr11:100569021-100631075	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100588800-100591400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:100589000-100592200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:100589800-100591000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:100589800-100591000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr11:100589800-100591000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:100589800-100591000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:100589800-100591000	Enhancers	Fetal Heart	heart
8	chr11:100589800-100591000	Enhancers	NHDF-Ad	bronchial
9	chr11:100589800-100591000	Enhancers	NHLF	lung
10	chr11:100589800-100591200	Flanking Active TSS	A549	lung
11	chr11:100590000-100591000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr11:100590000-100591000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr11:100590000-100591000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:100590000-100591000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:100590000-100591000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr11:100590000-100591000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:100590000-100591000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:100590000-100591000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:100590000-100591000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr11:100590000-100591000	Enhancers	Fetal Muscle Leg	muscle
21	chr11:100590000-100591000	Enhancers	Fetal Stomach	stomach
22	chr11:100590000-100591000	Enhancers	Gastric	stomach
23	chr11:100590000-100591000	Enhancers	Left Ventricle	heart
24	chr11:100590000-100591000	Enhancers	Psoas Muscle	Psoas
25	chr11:100590000-100591000	Enhancers	Stomach Mucosa	stomach
26	chr11:100590000-100591000	Enhancers	HSMM	muscle
27	chr11:100590000-100591000	Enhancers	Osteobl	bone
28	chr11:100590000-100591200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:100590000-100591200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr11:100590000-100591200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:100590000-100591200	Enhancers	HUVEC	blood vessel
32	chr11:100590000-100591200	Enhancers	NH-A	brain
33	chr11:100590200-100591000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:100590200-100591000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:100590200-100591000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:100590200-100591000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:100590200-100591000	Enhancers	Aorta	Aorta
38	chr11:100590200-100591000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:100590200-100591000	Enhancers	Brain Substantia Nigra	brain
40	chr11:100590200-100591000	Enhancers	Esophagus	oesophagus
41	chr11:100590200-100591000	Enhancers	Fetal Intestine Large	intestine
42	chr11:100590200-100591000	Enhancers	Placenta	Placenta
43	chr11:100590200-100591000	Enhancers	Ovary	ovary
44	chr11:100590200-100591000	Enhancers	Right Atrium	heart
45	chr11:100590200-100591000	Enhancers	Small Intestine	intestine
46	chr11:100590200-100591000	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr11:100590200-100591000	Flanking Active TSS	Hela-S3	cervix
48	chr11:100590200-100591000	Enhancers	HMEC	breast
49	chr11:100590200-100591000	Flanking Active TSS	HSMMtube	muscle
50	chr11:100590200-100591200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links