Variant report

Variant	rs61890815
Chromosome Location	chr11:100743463-100743464
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100738487..100741101-chr11:100743408..100746316,3	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10431109	1.00[AFR][1000 genomes]
rs10488786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224400	1.00[AFR][1000 genomes]
rs11224402	1.00[AFR][1000 genomes]
rs11224407	1.00[AFR][1000 genomes]
rs11224408	1.00[AFR][1000 genomes]
rs11224411	1.00[AFR][1000 genomes]
rs11224430	1.00[AFR][1000 genomes]
rs11224442	1.00[AFR][1000 genomes]
rs11224443	1.00[AFR][1000 genomes]
rs11224445	1.00[AFR][1000 genomes]
rs11224446	1.00[AFR][1000 genomes]
rs11224457	1.00[AFR][1000 genomes]
rs11224467	1.00[AFR][1000 genomes]
rs11224471	1.00[AFR][1000 genomes]
rs11224490	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224491	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224492	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224493	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11224495	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221887	1.00[AFR][1000 genomes]
rs12223958	1.00[AFR][1000 genomes]
rs12225108	1.00[AFR][1000 genomes]
rs12226782	1.00[AFR][1000 genomes]
rs12808052	0.98[ASN][1000 genomes]
rs1502283	1.00[AFR][1000 genomes]
rs2897755	1.00[AFR][1000 genomes]
rs517349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs551860	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs561267	0.82[ASN][1000 genomes]
rs581773	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59410492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599651	0.96[ASN][1000 genomes]
rs61890769	1.00[AFR][1000 genomes]
rs61890770	1.00[AFR][1000 genomes]
rs61890784	1.00[AFR][1000 genomes]
rs61890786	1.00[AFR][1000 genomes]
rs61890806	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61890817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890819	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890820	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890821	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890822	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890823	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs619043	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61910470	1.00[AFR][1000 genomes]
rs61910471	1.00[AFR][1000 genomes]
rs61910473	1.00[AFR][1000 genomes]
rs61910474	1.00[AFR][1000 genomes]
rs61910475	1.00[AFR][1000 genomes]
rs61910477	1.00[AFR][1000 genomes]
rs61910479	1.00[AFR][1000 genomes]
rs61910504	1.00[AFR][1000 genomes]
rs619191	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs633021	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs646865	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs660410	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs665424	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs675486	0.96[ASN][1000 genomes]
rs679012	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7115233	1.00[ASN][1000 genomes]
rs7342248	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73571624	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100720200-100745000	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:100722800-100746400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:100722800-100747200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:100733800-100746000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:100734200-100748400	Weak transcription	Left Ventricle	heart
6	chr11:100734400-100747400	Weak transcription	Adipose Nuclei	Adipose
7	chr11:100734400-100747600	Weak transcription	Fetal Stomach	stomach
8	chr11:100734400-100747600	Weak transcription	Right Atrium	heart
9	chr11:100737600-100745400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:100738200-100744200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:100741200-100743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:100741200-100744400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:100741200-100744600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:100741200-100745000	Weak transcription	Fetal Heart	heart
15	chr11:100741200-100747400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:100741400-100744800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:100741400-100750200	Weak transcription	K562	blood
18	chr11:100741600-100744400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:100741600-100748200	Weak transcription	Fetal Intestine Small	intestine
20	chr11:100743000-100748200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr11:100743200-100744600	Enhancers	Stomach Mucosa	stomach
22	chr11:100743200-100745400	Enhancers	NHLF	lung
23	chr11:100743200-100746800	Weak transcription	Spleen	Spleen
24	chr11:100743200-100749600	Enhancers	HSMM	muscle
25	chr11:100743400-100743600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr11:100743400-100744600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:100743400-100744600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr11:100743400-100744800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:100743400-100744800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:100743400-100745000	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr11:100743400-100745200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:100743400-100745400	Enhancers	Brain Germinal Matrix	brain
33	chr11:100743400-100747400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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