Variant report

Variant	rs619043
Chromosome Location	chr11:100705866-100705867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10488786	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11224490	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11224491	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11224492	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11224493	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11224494	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11224495	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs517349	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs551860	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs561267	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs581773	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59410492	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs599651	0.83[ASN][1000 genomes]
rs61890806	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61890815	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61890817	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61890819	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61890820	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61890821	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61890822	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61890823	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs619191	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs633021	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs646865	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs660410	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs665424	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs675486	0.83[ASN][1000 genomes]
rs679012	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7115233	0.81[ASN][1000 genomes]
rs7342248	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73571624	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100698800-100712400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:100699600-100722400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:100701600-100708200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:100701600-100717000	Weak transcription	Fetal Kidney	kidney
5	chr11:100702000-100706600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:100702800-100707000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:100703000-100706200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:100703000-100706800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:100703000-100707400	Weak transcription	NH-A	brain
10	chr11:100703000-100707600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:100703000-100710800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:100703000-100731800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:100703200-100707800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:100703800-100707400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:100703800-100712400	Weak transcription	Left Ventricle	heart
16	chr11:100704000-100707600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:100704400-100710200	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:100704600-100706600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:100704600-100706800	Weak transcription	NHDF-Ad	bronchial
20	chr11:100704600-100707200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:100704600-100708000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:100704600-100719600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:100704800-100710400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:100705200-100711200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:100705200-100711800	Weak transcription	Stomach Mucosa	stomach
26	chr11:100705400-100706200	Weak transcription	Fetal Heart	heart
27	chr11:100705400-100706800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:100705400-100707000	Weak transcription	Psoas Muscle	Psoas
29	chr11:100705400-100711800	Weak transcription	A549	lung
30	chr11:100705400-100712000	Weak transcription	Liver	Liver
31	chr11:100705400-100712600	Weak transcription	HSMMtube	muscle

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