Variant report

Variant	rs73571624
Chromosome Location	chr11:100752141-100752142
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100744760..100747273-chr11:100751720..100753888,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10488786	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11224490	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11224491	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11224492	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11224493	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11224494	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11224495	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12808052	0.97[ASN][1000 genomes]
rs517349	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs551860	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs561267	0.81[ASN][1000 genomes]
rs581773	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59410492	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs599651	0.95[ASN][1000 genomes]
rs61890806	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61890815	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61890817	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61890819	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61890820	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61890821	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61890822	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61890823	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs619043	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs619191	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs633021	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs646865	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs660410	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs665424	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs675486	0.95[ASN][1000 genomes]
rs679012	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7106381	0.91[AFR][1000 genomes]
rs7115233	0.99[ASN][1000 genomes]
rs7125051	0.91[AFR][1000 genomes]
rs7342172	0.91[AFR][1000 genomes]
rs7342248	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7342285	0.91[AFR][1000 genomes]
rs73569787	0.91[AFR][1000 genomes]
rs73569790	0.91[AFR][1000 genomes]
rs73569794	0.86[AFR][1000 genomes]
rs73571603	0.91[AFR][1000 genomes]
rs73571607	0.86[AFR][1000 genomes]
rs73571620	0.91[AFR][1000 genomes]
rs73577320	0.91[AFR][1000 genomes]
rs73577331	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100746600-100758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:100747800-100755600	Weak transcription	Right Atrium	heart
3	chr11:100748000-100754200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:100749200-100758400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:100749400-100759600	Weak transcription	NH-A	brain
6	chr11:100749600-100761200	Weak transcription	HSMM	muscle
7	chr11:100750200-100754800	Weak transcription	HSMMtube	muscle
8	chr11:100750600-100760800	Weak transcription	NHDF-Ad	bronchial
9	chr11:100751400-100759200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:100752000-100752600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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