Variant report

Variant	rs7125051
Chromosome Location	chr11:100717333-100717334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs59410492	0.86[AFR][1000 genomes]
rs61890823	0.91[AFR][1000 genomes]
rs7106381	1.00[AFR][1000 genomes]
rs7342172	1.00[AFR][1000 genomes]
rs7342285	1.00[AFR][1000 genomes]
rs73569787	1.00[AFR][1000 genomes]
rs73569790	1.00[AFR][1000 genomes]
rs73569794	0.95[AFR][1000 genomes]
rs73571603	1.00[AFR][1000 genomes]
rs73571607	0.95[AFR][1000 genomes]
rs73571620	1.00[AFR][1000 genomes]
rs73571624	0.91[AFR][1000 genomes]
rs73577320	1.00[AFR][1000 genomes]
rs73577331	1.00[AFR][1000 genomes]
rs7932727	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv468849	chr11:100713227-100733120	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv556129	chr11:100713227-100733120	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100699600-100722400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:100703000-100731800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:100704600-100719600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:100711000-100719200	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:100712800-100718200	Weak transcription	Stomach Mucosa	stomach
6	chr11:100713200-100718800	Weak transcription	A549	lung
7	chr11:100713400-100722000	Weak transcription	Hela-S3	cervix
8	chr11:100715600-100718000	Weak transcription	Liver	Liver
9	chr11:100716800-100719600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:100716800-100727000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:100717000-100717400	ZNF genes & repeats	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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