Variant report

Variant	rs73571607
Chromosome Location	chr11:100741212-100741213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:100732938..100736079-chr11:100738276..100741715,4	K562	blood:
2	chr11:100736156..100739603-chr11:100739743..100742359,3	MCF-7	breast:
3	chr11:100739216..100741248-chr11:100744274..100747106,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs59410492	0.91[AFR][1000 genomes]
rs61890823	0.86[AFR][1000 genomes]
rs7106381	0.95[AFR][1000 genomes]
rs7125051	0.95[AFR][1000 genomes]
rs7342172	0.95[AFR][1000 genomes]
rs7342285	0.95[AFR][1000 genomes]
rs73569787	0.95[AFR][1000 genomes]
rs73569790	0.95[AFR][1000 genomes]
rs73569794	0.90[AFR][1000 genomes]
rs73571603	0.95[AFR][1000 genomes]
rs73571620	0.95[AFR][1000 genomes]
rs73571624	0.86[AFR][1000 genomes]
rs73577320	0.95[AFR][1000 genomes]
rs73577331	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100720200-100745000	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:100722800-100746400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:100722800-100747200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:100733800-100746000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:100734200-100748400	Weak transcription	Left Ventricle	heart
6	chr11:100734400-100747400	Weak transcription	Adipose Nuclei	Adipose
7	chr11:100734400-100747600	Weak transcription	Fetal Stomach	stomach
8	chr11:100734400-100747600	Weak transcription	Right Atrium	heart
9	chr11:100734800-100743200	Weak transcription	HSMM	muscle
10	chr11:100737600-100745400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:100737800-100741400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:100738200-100744200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:100739000-100743400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:100740000-100741400	Enhancers	K562	blood
15	chr11:100740200-100741400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:100740200-100741400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:100740400-100741600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:100740600-100741400	Enhancers	Fetal Intestine Large	intestine
19	chr11:100740600-100741600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr11:100741000-100741400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:100741000-100741400	Enhancers	Duodenum Mucosa	Duodenum
22	chr11:100741000-100743200	Weak transcription	Stomach Mucosa	stomach
23	chr11:100741200-100741600	Enhancers	Fetal Intestine Small	intestine
24	chr11:100741200-100743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:100741200-100744400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:100741200-100744600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:100741200-100745000	Weak transcription	Fetal Heart	heart
28	chr11:100741200-100747400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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