Variant report

Variant	rs7106381
Chromosome Location	chr11:100749396-100749397
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs59410492	0.86[AFR][1000 genomes]
rs61890823	0.91[AFR][1000 genomes]
rs7125051	1.00[AFR][1000 genomes]
rs7342172	1.00[AFR][1000 genomes]
rs7342285	1.00[AFR][1000 genomes]
rs73569787	1.00[AFR][1000 genomes]
rs73569790	1.00[AFR][1000 genomes]
rs73569794	0.95[AFR][1000 genomes]
rs73571603	1.00[AFR][1000 genomes]
rs73571607	0.95[AFR][1000 genomes]
rs73571620	1.00[AFR][1000 genomes]
rs73571624	0.91[AFR][1000 genomes]
rs73577320	1.00[AFR][1000 genomes]
rs73577331	1.00[AFR][1000 genomes]
rs7932727	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100741400-100750200	Weak transcription	K562	blood
2	chr11:100743200-100749600	Enhancers	HSMM	muscle
3	chr11:100746000-100750200	Enhancers	HSMMtube	muscle
4	chr11:100746200-100750000	Enhancers	NHLF	lung
5	chr11:100746400-100749400	Enhancers	NH-A	brain
6	chr11:100746400-100750200	Enhancers	Osteobl	bone
7	chr11:100746400-100750600	Enhancers	NHDF-Ad	bronchial
8	chr11:100746600-100758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:100746800-100749400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:100747400-100749600	Enhancers	Adipose Nuclei	Adipose
11	chr11:100747600-100750200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:100747800-100755600	Weak transcription	Right Atrium	heart
13	chr11:100748000-100754200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:100748400-100749800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:100748400-100750200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:100748800-100749400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:100749000-100749400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:100749200-100749400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:100749200-100758400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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