Variant report

Variant	rs73571620
Chromosome Location	chr11:100750357-100750358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs59410492	0.86[AFR][1000 genomes]
rs61890823	0.91[AFR][1000 genomes]
rs7106381	1.00[AFR][1000 genomes]
rs7125051	1.00[AFR][1000 genomes]
rs7342172	1.00[AFR][1000 genomes]
rs7342285	1.00[AFR][1000 genomes]
rs73569787	1.00[AFR][1000 genomes]
rs73569790	1.00[AFR][1000 genomes]
rs73569794	0.95[AFR][1000 genomes]
rs73571603	1.00[AFR][1000 genomes]
rs73571607	0.95[AFR][1000 genomes]
rs73571624	0.91[AFR][1000 genomes]
rs73577320	1.00[AFR][1000 genomes]
rs73577331	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100746400-100750600	Enhancers	NHDF-Ad	bronchial
2	chr11:100746600-100758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:100747800-100755600	Weak transcription	Right Atrium	heart
4	chr11:100748000-100754200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:100749200-100758400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:100749400-100750400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:100749400-100759600	Weak transcription	NH-A	brain
8	chr11:100749600-100761200	Weak transcription	HSMM	muscle
9	chr11:100750200-100750800	Enhancers	K562	blood
10	chr11:100750200-100751400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:100750200-100754800	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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