Variant report

Variant	rs61890820
Chromosome Location	chr11:100748251-100748252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10431109	1.00[AFR][1000 genomes]
rs10488786	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224400	1.00[AFR][1000 genomes]
rs11224402	1.00[AFR][1000 genomes]
rs11224407	1.00[AFR][1000 genomes]
rs11224408	1.00[AFR][1000 genomes]
rs11224411	1.00[AFR][1000 genomes]
rs11224430	1.00[AFR][1000 genomes]
rs11224442	1.00[AFR][1000 genomes]
rs11224443	1.00[AFR][1000 genomes]
rs11224445	1.00[AFR][1000 genomes]
rs11224446	1.00[AFR][1000 genomes]
rs11224457	1.00[AFR][1000 genomes]
rs11224467	1.00[AFR][1000 genomes]
rs11224471	1.00[AFR][1000 genomes]
rs11224490	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224491	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224492	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224493	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224494	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11224495	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221887	1.00[AFR][1000 genomes]
rs12223958	1.00[AFR][1000 genomes]
rs12225108	1.00[AFR][1000 genomes]
rs12226782	1.00[AFR][1000 genomes]
rs12808052	0.98[ASN][1000 genomes]
rs1502283	1.00[AFR][1000 genomes]
rs2897755	1.00[AFR][1000 genomes]
rs517349	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs551860	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs561267	0.82[ASN][1000 genomes]
rs581773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59410492	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599651	0.96[ASN][1000 genomes]
rs61890769	1.00[AFR][1000 genomes]
rs61890770	1.00[AFR][1000 genomes]
rs61890784	1.00[AFR][1000 genomes]
rs61890786	1.00[AFR][1000 genomes]
rs61890806	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61890815	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890817	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890822	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890823	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs619043	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61910470	1.00[AFR][1000 genomes]
rs61910471	1.00[AFR][1000 genomes]
rs61910473	1.00[AFR][1000 genomes]
rs61910474	1.00[AFR][1000 genomes]
rs61910475	1.00[AFR][1000 genomes]
rs61910477	1.00[AFR][1000 genomes]
rs61910479	1.00[AFR][1000 genomes]
rs61910504	1.00[AFR][1000 genomes]
rs619191	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs633021	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs646865	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs660410	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs665424	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs675486	0.96[ASN][1000 genomes]
rs679012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7115233	1.00[ASN][1000 genomes]
rs7342248	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73571624	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100734200-100748400	Weak transcription	Left Ventricle	heart
2	chr11:100741400-100750200	Weak transcription	K562	blood
3	chr11:100743200-100749600	Enhancers	HSMM	muscle
4	chr11:100744400-100748400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:100744400-100748400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:100744600-100748400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:100744800-100748400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:100745400-100749200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:100746000-100750200	Enhancers	HSMMtube	muscle
10	chr11:100746200-100749200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:100746200-100750000	Enhancers	NHLF	lung
12	chr11:100746400-100748400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:100746400-100749400	Enhancers	NH-A	brain
14	chr11:100746400-100750200	Enhancers	Osteobl	bone
15	chr11:100746400-100750600	Enhancers	NHDF-Ad	bronchial
16	chr11:100746600-100748400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:100746600-100748400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:100746600-100758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:100746800-100749400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:100747000-100748400	Enhancers	NHEK	skin
21	chr11:100747000-100749200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:100747200-100748400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:100747400-100748400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:100747400-100749600	Enhancers	Adipose Nuclei	Adipose
25	chr11:100747600-100750200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:100747800-100748400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:100747800-100748400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr11:100747800-100748400	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:100747800-100755600	Weak transcription	Right Atrium	heart
30	chr11:100748000-100748400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:100748000-100754200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:100748200-100748600	Enhancers	Fetal Stomach	stomach
33	chr11:100748200-100748800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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