Variant report

Variant	rs61890769
Chromosome Location	chr11:100655549-100655550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10431109	1.00[AFR][1000 genomes]
rs10488786	1.00[AFR][1000 genomes]
rs11224400	1.00[AFR][1000 genomes]
rs11224402	1.00[AFR][1000 genomes]
rs11224407	1.00[AFR][1000 genomes]
rs11224408	1.00[AFR][1000 genomes]
rs11224411	1.00[AFR][1000 genomes]
rs11224430	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11224436	0.94[ASN][1000 genomes]
rs11224442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11224443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11224445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224447	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224450	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11224457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224464	0.87[ASN][1000 genomes]
rs11224467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11224471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11224472	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11224473	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11224493	1.00[AFR][1000 genomes]
rs11224494	1.00[AFR][1000 genomes]
rs11224495	1.00[AFR][1000 genomes]
rs12221887	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12223958	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12225108	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12226782	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1502283	1.00[AFR][1000 genomes]
rs17095481	0.99[ASN][1000 genomes]
rs17652307	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2897755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs517349	1.00[AFR][1000 genomes]
rs581773	1.00[AFR][1000 genomes]
rs58232316	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59240226	0.95[ASN][1000 genomes]
rs60799929	0.95[ASN][1000 genomes]
rs61890770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890783	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61890784	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61890786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61890788	0.87[ASN][1000 genomes]
rs61890789	0.87[ASN][1000 genomes]
rs61890806	1.00[AFR][1000 genomes]
rs61890815	1.00[AFR][1000 genomes]
rs61890817	1.00[AFR][1000 genomes]
rs61890819	1.00[AFR][1000 genomes]
rs61890820	1.00[AFR][1000 genomes]
rs61890821	1.00[AFR][1000 genomes]
rs61910470	1.00[AFR][1000 genomes]
rs61910471	1.00[AFR][1000 genomes]
rs61910473	1.00[AFR][1000 genomes]
rs61910474	1.00[AFR][1000 genomes]
rs61910475	1.00[AFR][1000 genomes]
rs61910477	1.00[AFR][1000 genomes]
rs61910479	1.00[AFR][1000 genomes]
rs61910503	0.82[AMR][1000 genomes]
rs61910504	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs679012	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100624600-100655600	Weak transcription	Left Ventricle	heart
2	chr11:100624600-100655600	Weak transcription	Right Ventricle	heart
3	chr11:100633200-100655600	Weak transcription	Psoas Muscle	Psoas
4	chr11:100640000-100655600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:100640800-100655600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:100640800-100655600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:100643200-100658000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:100643200-100660000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:100643400-100655600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:100645400-100655800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:100645600-100655600	Weak transcription	Gastric	stomach
12	chr11:100645600-100679800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:100645800-100655600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:100645800-100656000	Weak transcription	Colonic Mucosa	Colon
15	chr11:100645800-100679600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:100646400-100655800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:100649000-100655600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:100649000-100655600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:100649000-100655600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:100649000-100655800	Weak transcription	HepG2	liver
21	chr11:100649600-100655800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:100649800-100655600	Weak transcription	A549	lung
23	chr11:100649800-100661800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:100651400-100655800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:100651600-100655600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:100651600-100656000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:100652000-100659600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:100652200-100655600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:100653200-100660000	Weak transcription	NHEK	skin
30	chr11:100653400-100660200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:100654200-100655800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:100654200-100656600	Enhancers	Fetal Lung	lung
33	chr11:100654200-100656800	Enhancers	Duodenum Mucosa	Duodenum
34	chr11:100654200-100657000	Enhancers	Fetal Intestine Small	intestine
35	chr11:100654200-100657000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr11:100654200-100658400	Enhancers	Stomach Mucosa	stomach
37	chr11:100654400-100655600	Weak transcription	Right Atrium	heart
38	chr11:100654400-100657000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:100654400-100658800	Enhancers	Fetal Heart	heart
40	chr11:100654400-100671200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:100655200-100656000	Weak transcription	Fetal Intestine Large	intestine
42	chr11:100655200-100656600	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr11:100655200-100656600	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr11:100655200-100656800	Enhancers	Small Intestine	intestine
45	chr11:100655400-100657600	Enhancers	Liver	Liver

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