Variant report

Variant	rs61890789
Chromosome Location	chr11:100687084-100687085
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11224430	0.82[ASN][1000 genomes]
rs11224436	0.82[ASN][1000 genomes]
rs11224443	0.82[ASN][1000 genomes]
rs11224445	0.87[ASN][1000 genomes]
rs11224446	0.87[ASN][1000 genomes]
rs11224447	0.87[ASN][1000 genomes]
rs11224450	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11224457	0.91[ASN][1000 genomes]
rs11224464	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224467	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224471	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224472	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224473	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221887	0.82[ASN][1000 genomes]
rs12225108	0.82[ASN][1000 genomes]
rs12226782	0.82[ASN][1000 genomes]
rs17095481	0.86[ASN][1000 genomes]
rs2897755	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58232316	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59240226	0.83[ASN][1000 genomes]
rs60799929	0.83[ASN][1000 genomes]
rs61890769	0.87[ASN][1000 genomes]
rs61890770	0.87[ASN][1000 genomes]
rs61890783	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61890784	0.91[ASN][1000 genomes]
rs61890786	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100663000-100691800	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:100670000-100697400	Weak transcription	Placenta	Placenta
3	chr11:100673600-100687600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:100680400-100687400	Weak transcription	Fetal Heart	heart
5	chr11:100680600-100687400	Weak transcription	Left Ventricle	heart
6	chr11:100680600-100689000	Weak transcription	Psoas Muscle	Psoas
7	chr11:100680600-100691800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:100680800-100687400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:100680800-100696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:100681200-100698000	Weak transcription	Stomach Mucosa	stomach
11	chr11:100681400-100701000	Weak transcription	HSMM	muscle
12	chr11:100682000-100687400	Weak transcription	NHEK	skin
13	chr11:100682000-100688400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:100684000-100691000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:100684000-100691800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:100684200-100688800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:100684200-100689000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:100685800-100693400	Weak transcription	Primary B cells from cord blood	blood
19	chr11:100686200-100691800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:100686200-100702800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:100686800-100689000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:100687000-100687200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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