Variant report

Variant	rs11224559
Chromosome Location	chr11:100901748-100901749
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11571276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12099167	1.00[AMR][1000 genomes]
rs12281179	1.00[EUR][1000 genomes]
rs12287806	1.00[EUR][1000 genomes]
rs12291372	1.00[EUR][1000 genomes]
rs13377486	1.00[EUR][1000 genomes]
rs61435056	1.00[EUR][1000 genomes]
rs7947548	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100893800-100903200	Weak transcription	Aorta	Aorta
2	chr11:100899600-100903200	Weak transcription	Ovary	ovary
3	chr11:100900000-100903400	Enhancers	NHDF-Ad	bronchial
4	chr11:100900400-100905000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:100900600-100902000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:100900800-100904800	Weak transcription	Psoas Muscle	Psoas
7	chr11:100901400-100902600	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:100901600-100902400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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