Variant report

Variant	rs11571276
Chromosome Location	chr11:100908670-100908671
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11224559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12099167	1.00[AMR][1000 genomes]
rs12281179	1.00[EUR][1000 genomes]
rs12287806	1.00[EUR][1000 genomes]
rs12291372	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13377486	1.00[EUR][1000 genomes]
rs61435056	1.00[EUR][1000 genomes]
rs7947548	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv826058	chr11:100908358-100908879	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2762939	chr11:100908670-100913694	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905200-100935800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:100905400-100911000	Weak transcription	Ovary	ovary
3	chr11:100905400-100920000	Weak transcription	Fetal Lung	lung
4	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
5	chr11:100905600-100910400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:100908400-100909600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:100908600-100909000	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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