Variant report

Variant	rs11224631
Chromosome Location	chr11:101080126-101080127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10501975	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11224627	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11224630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224637	0.86[AMR][1000 genomes]
rs11224639	0.86[AMR][1000 genomes]
rs11224658	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11224677	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11224678	0.82[AMR][1000 genomes]
rs11224679	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11224683	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11224684	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11518287	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11518484	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11518485	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11602390	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12146480	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12361886	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12363330	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12364709	0.82[AMR][1000 genomes]
rs17737792	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1799710	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1942843	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4121761	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4121762	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4297428	0.83[AFR][1000 genomes]
rs487153	0.83[AFR][1000 genomes]
rs508264	0.83[AFR][1000 genomes]
rs522930	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs58128467	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs61892343	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61892344	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61892348	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7112806	0.83[AFR][1000 genomes]
rs7128627	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101037400-101080800	Weak transcription	Left Ventricle	heart
2	chr11:101070800-101082200	Weak transcription	Aorta	Aorta
3	chr11:101074800-101080200	Weak transcription	Ovary	ovary
4	chr11:101078800-101080800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:101080000-101080200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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