Variant report

Variant	rs12364709
Chromosome Location	chr11:101099009-101099010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101098716..101101075-chr11:101193204..101195240,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10501975	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224627	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11224630	0.82[AMR][1000 genomes]
rs11224631	0.82[AMR][1000 genomes]
rs11224637	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224639	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224658	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224677	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11224678	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11224679	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11224683	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11224684	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11224691	1.00[ASN][1000 genomes]
rs11518287	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11518484	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11518485	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602390	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12146480	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361886	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12363330	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17737792	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1799710	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1942843	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1943770	1.00[ASN][1000 genomes]
rs4121761	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4121762	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4297428	1.00[ASN][1000 genomes]
rs4304740	1.00[ASN][1000 genomes]
rs474320	0.80[EUR][1000 genomes]
rs487153	0.80[EUR][1000 genomes]
rs508264	0.80[EUR][1000 genomes]
rs517861	0.80[EUR][1000 genomes]
rs522930	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs528719	0.80[EUR][1000 genomes]
rs538343	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs546697	0.80[EUR][1000 genomes]
rs570245	0.80[EUR][1000 genomes]
rs58128467	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581805	0.80[EUR][1000 genomes]
rs583701	0.80[EUR][1000 genomes]
rs600354	0.80[EUR][1000 genomes]
rs61892343	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892344	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892348	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659331	0.80[EUR][1000 genomes]
rs7112806	0.87[ASN][1000 genomes]
rs7128627	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101092400-101102000	Weak transcription	Aorta	Aorta
2	chr11:101095200-101105400	Weak transcription	Ovary	ovary

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