Variant report
| Variant | rs1943770 |
|---|---|
| Chromosome Location | chr11:101135616-101135617 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10501975 | 1.00[ASN][1000 genomes] |
| rs11224627 | 0.88[ASN][1000 genomes] |
| rs11224637 | 1.00[ASN][1000 genomes] |
| rs11224639 | 1.00[ASN][1000 genomes] |
| rs11224658 | 1.00[ASN][1000 genomes] |
| rs11224677 | 1.00[ASN][1000 genomes] |
| rs11224678 | 1.00[ASN][1000 genomes] |
| rs11224679 | 1.00[ASN][1000 genomes] |
| rs11224683 | 1.00[ASN][1000 genomes] |
| rs11224684 | 1.00[ASN][1000 genomes] |
| rs11224691 | 1.00[ASN][1000 genomes] |
| rs11518287 | 1.00[ASN][1000 genomes] |
| rs11518484 | 1.00[ASN][1000 genomes] |
| rs11518485 | 1.00[ASN][1000 genomes] |
| rs11602390 | 1.00[ASN][1000 genomes] |
| rs12146480 | 1.00[ASN][1000 genomes] |
| rs12363330 | 0.82[ASN][1000 genomes] |
| rs12364709 | 1.00[ASN][1000 genomes] |
| rs17737792 | 1.00[ASN][1000 genomes] |
| rs1799710 | 0.88[ASN][1000 genomes] |
| rs1942843 | 0.88[ASN][1000 genomes] |
| rs4121761 | 1.00[ASN][1000 genomes] |
| rs4121762 | 1.00[ASN][1000 genomes] |
| rs4297428 | 1.00[ASN][1000 genomes] |
| rs4304740 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs522930 | 0.88[ASN][1000 genomes] |
| rs58128467 | 1.00[ASN][1000 genomes] |
| rs61892343 | 1.00[ASN][1000 genomes] |
| rs61892344 | 1.00[ASN][1000 genomes] |
| rs61892348 | 1.00[ASN][1000 genomes] |
| rs7112806 | 0.87[ASN][1000 genomes] |
| rs7128627 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv556131 | chr11:100985777-101480017 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv530644 | chr11:101010088-101486038 | Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2753322 | chr11:101052790-101311790 | Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv832247 | chr11:101123483-101298787 | Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:101126400-101169400 | Weak transcription | Ovary | ovary |
| 2 | chr11:101135200-101135800 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
