Variant report

Variant	rs581805
Chromosome Location	chr11:101028965-101028966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10501975	0.82[EUR][1000 genomes]
rs11224613	0.86[AFR][1000 genomes]
rs11224617	0.82[AFR][1000 genomes]
rs11224627	0.84[EUR][1000 genomes]
rs11224637	0.82[EUR][1000 genomes]
rs11224639	0.82[EUR][1000 genomes]
rs1145465	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11518287	0.82[EUR][1000 genomes]
rs11518484	0.82[EUR][1000 genomes]
rs11518485	0.82[EUR][1000 genomes]
rs12272483	0.82[AFR][1000 genomes]
rs12272772	0.82[AFR][1000 genomes]
rs12274270	0.82[AFR][1000 genomes]
rs12361886	0.82[EUR][1000 genomes]
rs12364709	0.80[EUR][1000 genomes]
rs1799710	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1942843	0.84[EUR][1000 genomes]
rs3740752	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740753	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4121761	0.82[EUR][1000 genomes]
rs4121762	0.82[EUR][1000 genomes]
rs471715	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474320	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482765	0.81[EUR][1000 genomes]
rs487153	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495210	0.81[EUR][1000 genomes]
rs502471	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505819	0.81[EUR][1000 genomes]
rs507141	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508264	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512846	0.81[EUR][1000 genomes]
rs517861	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520017	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522930	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs523081	0.80[EUR][1000 genomes]
rs525395	0.81[EUR][1000 genomes]
rs528177	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528719	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs538343	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs541463	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546697	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548711	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559700	0.81[EUR][1000 genomes]
rs562894	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565186	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568801	0.81[EUR][1000 genomes]
rs570245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570885	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571923	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571925	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs573932	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583701	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585447	0.80[EUR][1000 genomes]
rs600354	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891046	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892343	0.82[EUR][1000 genomes]
rs624661	0.80[EUR][1000 genomes]
rs640562	0.80[EUR][1000 genomes]
rs659048	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659331	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673943	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101026400-101035800	Weak transcription	Right Ventricle	heart
2	chr11:101028400-101031400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr11:101028600-101029200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr11:101028600-101029400	ZNF genes & repeats	Aorta	Aorta
5	chr11:101028600-101029600	ZNF genes & repeats	Ovary	ovary
6	chr11:101028800-101029400	ZNF genes & repeats	Left Ventricle	heart

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